Clone BO23356 Report

Search the DGRC for BO23356

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:233
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG30447-RA
Protein status:BO23356.pep: Imported from assembly
Sequenced Size:556

Clone Sequence Records

BO23356.complete Sequence

556 bp assembled on 2010-03-31

GenBank Submission: KX799697

> BO23356.complete
GAAGTTATCAGTCGACATGATGTCGAAAGATTTTGATTTTTCTCAGAAGG
GTATGAGCGACGCCACTAGTAGCGACTTACGTAACGAGTCAGCACATCCA
ACATTCTCTGGGACTAAGCAACTTTTCACGTTAAGCTCGCCGTTTTACCA
GGGACCCACGTCCTTTGGCGGTAGTGCGGCTATTACTCGCGTTTGGAACA
ATTTTAAGTGCAGCAGAATACTTGCTTCTGAAATCAACAAAAAGATGGAA
CCGCCAACTTATTCGGAGTCCTTAGAGTCGAAGATCATGAAACGCCGTCG
TCTGTACGCTCTTTTAAATAGGAAAGAAATTACGTATAGCAAATACCGGA
ATATACAGAATGAGTCCCGGATAGGAATCATTAAAGAGGTGGAGGAAACA
CAAATGCCAGAAACCACATATAAGAAGAAATCGCCTACGAAACCAGTTAT
GCGAACATTCTACTTCTCGGAGCCTATACCGCTAATGCAACATAATTCAA
AGCGCAATTTTGTATTTTCCGACCCAATTCCTCTGGATGCAAGCTTTCTA
GACCAT

BO23356.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG30447-RC 525 CG30447-PC 1..522 17..538 2610 100 Plus
CG30447-RB 525 CG30447-PB 1..522 17..538 2610 100 Plus
CG30447-RA 525 CG30447-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG30447-RC 805 CG30447-RC 57..579 16..538 2615 100 Plus
CG30447-RB 808 CG30447-RB 60..582 16..538 2615 100 Plus
CG30447-RA 785 CG30447-RA 37..559 16..538 2615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19947332..19947854 16..538 2615 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:42:36 has no hits.

BO23356.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:59 Download gff for BO23356.complete
Subject Subject Range Query Range Percent Splice Strand
CG30447-RA 40..561 17..540 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:30 Download gff for BO23356.complete
Subject Subject Range Query Range Percent Splice Strand
CG30447-RA 40..561 17..540 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:26 Download gff for BO23356.complete
Subject Subject Range Query Range Percent Splice Strand
CG30447-RA 38..559 17..540 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:26 Download gff for BO23356.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19947333..19947854 17..540 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:30 Download gff for BO23356.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15834838..15835359 17..540 99   Plus

BO23356.pep Sequence

Translation from 16 to 556

> BO23356.pep
MMSKDFDFSQKGMSDATSSDLRNESAHPTFSGTKQLFTLSSPFYQGPTSF
GGSAAITRVWNNFKCSRILASEINKKMEPPTYSESLESKIMKRRRLYALL
NRKEITYSKYRNIQNESRIGIIKEVEETQMPETTYKKKSPTKPVMRTFYF
SEPIPLMQHNSKRNFVFSDPIPLDASFLDH

BO23356.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG30447-PC 174 CG30447-PC 1..174 1..174 903 100 Plus
CG30447-PB 174 CG30447-PB 1..174 1..174 903 100 Plus
CG30447-PA 174 CG30447-PA 1..174 1..174 903 100 Plus