BO23376.complete Sequence
614 bp assembled on 2010-03-31
> BO23376.complete
GAAGTTATCAGTCGACATGGAAATGGATTACTATCTGCCAGTGTATAACG
GATCAAATTCGGTGGACGTGCCGGGGCTGATTGAAAGTCTCAAGCTGAAG
GAAACCAGTATATCGCCAATCGTGCTGGATCGCTATCCGCCGTACTCCCC
GTTCTATGGCGTGATGGGCGTCGTATTCTCCAGTGTGCTGACCTCCGCTG
GAGCGGCCTACGGAACTGCTGTTTCCGGAACTGGAATCGCCGCCACAGCG
GTGATGCGTCCCGAGCTGGTGATGAAGTCCATCATTCCGGTGGTCATGGC
GGGCATCATTGCCATATACGGTCTGGTGGTATCCGTGCTCCTATCTGGGG
AACTAGCGCCTGCTCCCAAATACTCGCTGCCCACCGGCTATGTACACCTG
GCCGCTGGACTTTCGGTGGGATTTGCTGGACTGGCTGCCGGATATGCAGT
GGGTGAAGTCGGCGAAGTGGGCGTGCGGCACATTGCCCTGCAGCCACGCC
TCTTTATCGGCATGATCCTGATCCTTATTTTCGCCGAGGTGCTCGGTCTC
TACGGCCTGATCATTGGGATTTATTTGTACACGGTCAACATTAAGGCAAG
CCTTTCTAGACCAT
BO23376.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-5-RA | 582 | CG6737-PA | 1..579 | 17..595 | 2895 | 100 | Plus |
Vha16-3-RB | 477 | CG32090-PB | 283..470 | 395..582 | 280 | 76.6 | Plus |
Vha16-3-RA | 477 | CG32090-PA | 283..470 | 395..582 | 280 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-5-RA | 725 | CG6737-RA | 87..665 | 17..595 | 2895 | 100 | Plus |
Vha16-3-RB | 633 | CG32090-RB | 351..538 | 395..582 | 280 | 76.6 | Plus |
Vha16-3-RA | 587 | CG32090-RA | 305..492 | 395..582 | 280 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10736379..10736957 | 595..17 | 2895 | 100 | Minus |
3L | 28110227 | 3L | 11473690..11473877 | 395..582 | 280 | 76.6 | Plus |
2R | 25286936 | 2R | 6627786..6627865 | 330..251 | 265 | 88.8 | Minus |
3L | 28110227 | 3L | 11475088..11475224 | 200..336 | 220 | 77.4 | Plus |
3L | 28110227 | 3L | 11475373..11475464 | 491..582 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:35:17 has no hits.
BO23376.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:15 Download gff for
BO23376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6737-RA | 1..579 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:03 Download gff for
BO23376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-5-RA | 87..665 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:15 Download gff for
BO23376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-5-RA | 87..665 | 17..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:15 Download gff for
BO23376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10736375..10736957 | 17..597 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:03 Download gff for
BO23376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10736375..10736957 | 17..597 | 99 | | Minus |
BO23376.pep Sequence
Translation from 16 to 613
> BO23376.pep
MEMDYYLPVYNGSNSVDVPGLIESLKLKETSISPIVLDRYPPYSPFYGVM
GVVFSSVLTSAGAAYGTAVSGTGIAATAVMRPELVMKSIIPVVMAGIIAI
YGLVVSVLLSGELAPAPKYSLPTGYVHLAAGLSVGFAGLAAGYAVGEVGE
VGVRHIALQPRLFIGMILILIFAEVLGLYGLIIGIYLYTVNIKASLSRP
BO23376.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-5-PA | 193 | CG6737-PA | 1..193 | 1..193 | 958 | 100 | Plus |
Vha16-1-PB | 159 | CG3161-PB | 10..158 | 41..189 | 539 | 71.1 | Plus |
Vha16-1-PA | 159 | CG3161-PA | 10..158 | 41..189 | 539 | 71.1 | Plus |
Vha16-1-PD | 159 | CG3161-PD | 10..158 | 41..189 | 539 | 71.1 | Plus |
Vha16-1-PC | 159 | CG3161-PC | 10..158 | 41..189 | 539 | 71.1 | Plus |