Clone BO23376 Report

Search the DGRC for BO23376

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:233
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptVha16-5-RA
Protein status:BO23376.pep: Imported from assembly
Sequenced Size:614

Clone Sequence Records

BO23376.complete Sequence

614 bp assembled on 2010-03-31

> BO23376.complete
GAAGTTATCAGTCGACATGGAAATGGATTACTATCTGCCAGTGTATAACG
GATCAAATTCGGTGGACGTGCCGGGGCTGATTGAAAGTCTCAAGCTGAAG
GAAACCAGTATATCGCCAATCGTGCTGGATCGCTATCCGCCGTACTCCCC
GTTCTATGGCGTGATGGGCGTCGTATTCTCCAGTGTGCTGACCTCCGCTG
GAGCGGCCTACGGAACTGCTGTTTCCGGAACTGGAATCGCCGCCACAGCG
GTGATGCGTCCCGAGCTGGTGATGAAGTCCATCATTCCGGTGGTCATGGC
GGGCATCATTGCCATATACGGTCTGGTGGTATCCGTGCTCCTATCTGGGG
AACTAGCGCCTGCTCCCAAATACTCGCTGCCCACCGGCTATGTACACCTG
GCCGCTGGACTTTCGGTGGGATTTGCTGGACTGGCTGCCGGATATGCAGT
GGGTGAAGTCGGCGAAGTGGGCGTGCGGCACATTGCCCTGCAGCCACGCC
TCTTTATCGGCATGATCCTGATCCTTATTTTCGCCGAGGTGCTCGGTCTC
TACGGCCTGATCATTGGGATTTATTTGTACACGGTCAACATTAAGGCAAG
CCTTTCTAGACCAT

BO23376.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-5-RA 582 CG6737-PA 1..579 17..595 2895 100 Plus
Vha16-3-RB 477 CG32090-PB 283..470 395..582 280 76.6 Plus
Vha16-3-RA 477 CG32090-PA 283..470 395..582 280 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-5-RA 725 CG6737-RA 87..665 17..595 2895 100 Plus
Vha16-3-RB 633 CG32090-RB 351..538 395..582 280 76.6 Plus
Vha16-3-RA 587 CG32090-RA 305..492 395..582 280 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10736379..10736957 595..17 2895 100 Minus
3L 28110227 3L 11473690..11473877 395..582 280 76.6 Plus
2R 25286936 2R 6627786..6627865 330..251 265 88.8 Minus
3L 28110227 3L 11475088..11475224 200..336 220 77.4 Plus
3L 28110227 3L 11475373..11475464 491..582 190 80.4 Plus
Blast to na_te.dros performed on 2014-11-26 15:35:17 has no hits.

BO23376.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:15 Download gff for BO23376.complete
Subject Subject Range Query Range Percent Splice Strand
CG6737-RA 1..579 17..597 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:03 Download gff for BO23376.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-5-RA 87..665 17..597 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:15 Download gff for BO23376.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-5-RA 87..665 17..597 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:15 Download gff for BO23376.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10736375..10736957 17..597 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:03 Download gff for BO23376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10736375..10736957 17..597 99   Minus

BO23376.pep Sequence

Translation from 16 to 613

> BO23376.pep
MEMDYYLPVYNGSNSVDVPGLIESLKLKETSISPIVLDRYPPYSPFYGVM
GVVFSSVLTSAGAAYGTAVSGTGIAATAVMRPELVMKSIIPVVMAGIIAI
YGLVVSVLLSGELAPAPKYSLPTGYVHLAAGLSVGFAGLAAGYAVGEVGE
VGVRHIALQPRLFIGMILILIFAEVLGLYGLIIGIYLYTVNIKASLSRP

BO23376.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-5-PA 193 CG6737-PA 1..193 1..193 958 100 Plus
Vha16-1-PB 159 CG3161-PB 10..158 41..189 539 71.1 Plus
Vha16-1-PA 159 CG3161-PA 10..158 41..189 539 71.1 Plus
Vha16-1-PD 159 CG3161-PD 10..158 41..189 539 71.1 Plus
Vha16-1-PC 159 CG3161-PC 10..158 41..189 539 71.1 Plus