Clone BO23379 Report

Search the DGRC for BO23379

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:233
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG6893-RB
Protein status:BO23379.pep: Imported from assembly
Sequenced Size:784

Clone Sequence Records

BO23379.complete Sequence

784 bp assembled on 2010-03-31

GenBank Submission: KX799423

> BO23379.complete
GAAGTTATCAGTCGACATGGTGGTTATCAAGAAGGACAGAGGAATGGCTT
CAAATCTCCAACAGGCAATTCGAACGCATGGTTTTATTTCACTATACGAT
GGATTAAGTGCCCAGTTATTGAGACAGCTGACATACACCTCGATGCGGTT
TCACCTGTACGAAATGGGAAAGGAGCACCTGGATGATCCTGCTGGTTTGT
TGGACAAAGTGCTGGTGGCTGCATTGGCTGGTTGTGTGGCTGGTGTGGTG
GGTACACCCATGGAGTTGATCAACACCCGGATGCAGGTCAATCGCGCGCT
GCCCAAGGAAACGCGGTGGAACTATCGAAACGTCTTCGATGGACTGTACC
GTGTGACCAGGGAAGAGGGCTTTACGAAGCTGTACAGCGGATGTTTCCTC
TCCTTTATGCGGTCCAGCCTCATCACCATCAGCCAAAATGCTGCTTACGA
TCAGGCCAAGCAGATCTACGCAGAATTTTTTCACATGAAGCACGACAACA
CATTGCTGCACCTGATAAGTTCCGTGACGGCTGCTTTCGTCTGCGGTCCA
ATCATCAAGCCCATTGAGAACTTGAGATACCTCAGAATGGTGGATTCAAG
AAGATTGATAAATTCCATTTCCTATATGATGCGCTTCGGAAGTCGCGGAC
CTTTTCGCGGTATGGTGCCCTATGTTTTGCGCATGGTACCCAATACGGTC
ATTACTTTTTTAAGTTTCGAGCAGCTTCGTGTTAATTTTGGGTACATTGA
AATTGAAGATGATGAAGCAAGCTTTCTAGACCAT

BO23379.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6893-RB 753 CG6893-PB 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6893-RB 1164 CG6893-RB 284..1033 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18694767..18695142 80..455 1880 100 Plus
3L 28110227 3L 18695203..18695517 452..766 1575 100 Plus
3L 28110227 3L 18694524..18694589 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:36:43 has no hits.

BO23379.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:19 Download gff for BO23379.complete
Subject Subject Range Query Range Percent Splice Strand
CG6893-RB 284..1033 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:22 Download gff for BO23379.complete
Subject Subject Range Query Range Percent Splice Strand
CG6893-RB 284..1033 17..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:49 Download gff for BO23379.complete
Subject Subject Range Query Range Percent Splice Strand
CG6893-RB 284..1033 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:49 Download gff for BO23379.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18694524..18694587 17..80 100 -> Plus
3L 18694768..18695141 81..454 100 -> Plus
3L 18695206..18695517 455..768 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:22 Download gff for BO23379.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18687624..18687687 17..80 100 -> Plus
arm_3L 18687868..18688241 81..454 100 -> Plus
arm_3L 18688306..18688617 455..768 99   Plus

BO23379.pep Sequence

Translation from 16 to 784

> BO23379.pep
MVVIKKDRGMASNLQQAIRTHGFISLYDGLSAQLLRQLTYTSMRFHLYEM
GKEHLDDPAGLLDKVLVAALAGCVAGVVGTPMELINTRMQVNRALPKETR
WNYRNVFDGLYRVTREEGFTKLYSGCFLSFMRSSLITISQNAAYDQAKQI
YAEFFHMKHDNTLLHLISSVTAAFVCGPIIKPIENLRYLRMVDSRRLINS
ISYMMRFGSRGPFRGMVPYVLRMVPNTVITFLSFEQLRVNFGYIEIEDDE
ASFLDH

BO23379.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6893-PB 250 CG6893-PB 1..250 1..250 1286 100 Plus
Dic1-PC 280 CG8790-PC 43..277 10..242 409 39.5 Plus
Dic1-PA 280 CG8790-PA 43..277 10..242 409 39.5 Plus
Dic1-PB 280 CG8790-PB 43..277 10..242 409 39.5 Plus
Dic4-PC 302 CG18363-PC 47..292 1..242 391 34.8 Plus