BO23380.complete Sequence
754 bp assembled on 2010-03-31
GenBank Submission: KX794586
> BO23380.complete
GAAGTTATCAGTCGACATGGCACAACCAGGCGGAGATCACATGATCATCG
CTATCACCACACTGTTGGTTTTGATCTGTTCCCTACATCTCGCCAATGCA
GCCAGCTATCAGCTACAATCTTACGATCTTGATACGGATAATAGGGCTGC
ATCGAACTCCAGCGAGGAGGTGTTCAATGGCGGAGTCACGTCCCTGGAAA
GACCTCTTTCTTGGCTGCGGAATGCCAACAGCGTGTTCGGCAGTCCCGCT
GGTCATGTGGTCATCCAGGTGGCCAAGGAGCTGTTACATCGATCAGCCGG
AAACAGTCAAGTTCTAAGTCTGAATCTGACCAACCTGCTTATCATCATAC
TCCTGAAAATACTTATCTTCTCAGCCGGAATGCTGGGCGCTGGGCACTGG
AGTGGCTATGGTTATGGACATGGTCGCTCAGCCGGTCGTAGTGATAACTT
CGGTTTGGGCATAGCTTCTGGCGATGACTATCTTATAACCGGATTTCTCG
CCGCCCAAGGAGCCGGCAGAGATGAGTGCCTCTATGCAGCATCCTGTGCC
TGCCCCACATCGGCCTATGAGTACGCGAAAGCAGGACGTGCTCTTATGGG
CGCCATTGAAGTTTTCCAAGGAGTGCCGCTGGAGAAGCCGCGCTACAACG
ACCTCATCGTCCTGATGGAGCGAGCCGCCTACGATGGCTTCCGAGGAGTG
GCCTGCAACACGACCCAGACCTGTGACGGATTGCTTGCAAGCTTTCTAGA
CCAT
BO23380.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12420-RA | 723 | CG12420-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12420-RA | 855 | CG12420-RA | 61..780 | 17..736 | 3600 | 100 | Plus |
| CG12817-RB | 1060 | CG12817-RB | 830..945 | 736..621 | 580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10223116..10223426 | 311..621 | 1555 | 100 | Plus |
| 3R | 32079331 | 3R | 10222758..10223053 | 17..312 | 1480 | 100 | Plus |
| 3R | 32079331 | 3R | 10223555..10223670 | 621..736 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:36:47 has no hits.
BO23380.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:20 Download gff for
BO23380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12420-RA | 46..765 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:25 Download gff for
BO23380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12420-RA | 61..780 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:51 Download gff for
BO23380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12420-RA | 61..780 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:51 Download gff for
BO23380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10223116..10223426 | 311..621 | 100 | -> | Plus |
| 3R | 10223556..10223670 | 622..738 | 98 | | Plus |
| 3R | 10222758..10223051 | 17..310 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:25 Download gff for
BO23380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6048480..6048773 | 17..310 | 100 | -> | Plus |
| arm_3R | 6048838..6049148 | 311..621 | 100 | -> | Plus |
| arm_3R | 6049278..6049392 | 622..738 | 98 | | Plus |
BO23380.pep Sequence
Translation from 16 to 754
> BO23380.pep
MAQPGGDHMIIAITTLLVLICSLHLANAASYQLQSYDLDTDNRAASNSSE
EVFNGGVTSLERPLSWLRNANSVFGSPAGHVVIQVAKELLHRSAGNSQVL
SLNLTNLLIIILLKILIFSAGMLGAGHWSGYGYGHGRSAGRSDNFGLGIA
SGDDYLITGFLAAQGAGRDECLYAASCACPTSAYEYAKAGRALMGAIEVF
QGVPLEKPRYNDLIVLMERAAYDGFRGVACNTTQTCDGLLASFLDH
BO23380.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12420-PA | 240 | CG12420-PA | 1..240 | 1..240 | 1237 | 100 | Plus |
