Clone BO23384 Report

Search the DGRC for BO23384

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:233
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG13829-RA
Protein status:BO23384.pep: Imported from assembly
Sequenced Size:667

Clone Sequence Records

BO23384.complete Sequence

667 bp assembled on 2010-03-31

GenBank Submission: KX795618

> BO23384.complete
GAAGTTATCAGTCGACATGATTGCCAAGCTGCGCAAGATTTATCCCAGTG
GAAAGGTGGTTAGCCATTCCCTCGCTCCCTGCTCCACAGCGGATCTGAAC
AATGCTGAACTTGTTTCCAATGTCAAGAAAAGGCGAGCCGAATATCTCGT
CGAACGAATGCAGCGACTGCTGCTCTTTCTGACCGTCTTCCTTCTGTTTC
CCGTGGTGATCTTCGTCATCTTCAAGTTCTTGATTATGGAGCCGCTCTAC
GGAAACAGCGATGACAATGTGGGCATTGGATCCGGCGTAGCCACGGTAAT
TGTGATGCATGTCCTGGTCACGGGCTATATCCTGCGCCTGATCTTCCTTC
AAGAGATTTCGAGCATGGAGAAGCTGGAGTGGGAAGTTCTGATGCCACCA
AACACCCAAATTCATGGATCCGTGTTCATTGTCCTGCTGCTGATGTCCTA
CTGTTCCCTAATAATTGGCTTTCCCATAGCCACCTTTTTTGCCCTGAAAT
TTGTGGTGCTCAAGAGCTATGCCCATATCAATGCCGATATTATTTCGACC
ATTTGCACCGTAGTTGCAGTTCATGCAGCAGTTGGCTTTTACATCTACCG
AGCCATCTATGCAAAGAGTGTGACGGCCAAAAGCGCCAAAATATCTCTGG
CAAGCTTTCTAGACCAT

BO23384.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13829-RA 636 CG13829-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13829-RA 810 CG13829-RA 21..653 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23160634..23161157 649..126 2620 100 Minus
3R 32079331 3R 23161208..23161318 127..17 555 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:40:11 has no hits.

BO23384.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:24 Download gff for BO23384.complete
Subject Subject Range Query Range Percent Splice Strand
CG13829-RA 21..653 17..651 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:04 Download gff for BO23384.complete
Subject Subject Range Query Range Percent Splice Strand
CG13829-RA 21..653 17..651 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:53 Download gff for BO23384.complete
Subject Subject Range Query Range Percent Splice Strand
CG13829-RA 21..653 17..651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:53 Download gff for BO23384.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23160632..23161155 128..651 99 <- Minus
3R 23161208..23161318 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:04 Download gff for BO23384.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18986354..18986877 128..651 99 <- Minus
arm_3R 18986930..18987040 17..127 100   Minus

BO23384.pep Sequence

Translation from 16 to 667

> BO23384.pep
MIAKLRKIYPSGKVVSHSLAPCSTADLNNAELVSNVKKRRAEYLVERMQR
LLLFLTVFLLFPVVIFVIFKFLIMEPLYGNSDDNVGIGSGVATVIVMHVL
VTGYILRLIFLQEISSMEKLEWEVLMPPNTQIHGSVFIVLLLMSYCSLII
GFPIATFFALKFVVLKSYAHINADIISTICTVVAVHAAVGFYIYRAIYAK
SVTAKSAKISLASFLDH

BO23384.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13829-PA 211 CG13829-PA 1..211 1..211 1046 100 Plus