Clone BO23393 Report

Search the DGRC for BO23393

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:233
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptSgf11-RB
Protein status:BO23393.pep: Imported from assembly
Sequenced Size:622

Clone Sequence Records

BO23393.complete Sequence

622 bp assembled on 2010-03-31

GenBank Submission: KX795835

> BO23393.complete
GAAGTTATCAGTCGACATGTCTGCAGCCAACATGCCGACGACAACAGGAG
CTCAGGGATCGGGAAACCAAGTTCCCACAACTAGCACTACGATTGTAAAC
CACTTCCGGGAGTTGATCAAGGAACCGAAGAACCTCGACGAGGCGGCCAA
CTATCTGTACCAGTCGCTGCTCGACGACGCCGTAGTCGGAATCTTTAACG
AGACACATCATCTGCGAAAGTCAGGGAATCTGGCCGCCCTGGACGGAGTG
CCGGAGGACTCAACCTATCGAATGTGCGAGATGCCCAACCTGGACATATT
CGGCATCTCAACGGCCAAAAAGCCAATGGACTGCACCTGCCCCAACTGTG
ATCGCCTGGTGGCCGCCGCCCGCTTCGCCCCGCACCTGGAAAAGTGCATG
GGCATGGGTCGTATCTCGTCGCGAATTGCCTCTCGTCGCTTGGCCACCAA
AGAGGGCGCCACATCCGCCCACCTGCACTCTTCGGGAAATACCGGAGGCA
CTGATGATGAGGATGACGTGGACTGGTCGTCCGACAAGCGTCGAAAGAAA
TCAAACCAGAACTCAAGGAACAACGGCTCCAAGAAGAACAATGGCAAAAC
CTTTGCAAGCTTTCTAGACCAT

BO23393.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Sgf11-RB 591 CG13379-PB 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Sgf11-RB 800 CG13379-RB 149..736 17..604 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18681101..18681688 604..17 2940 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:31:01 has no hits.

BO23393.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:01 Download gff for BO23393.complete
Subject Subject Range Query Range Percent Splice Strand
Sgf11-RB 103..690 17..606 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:08 Download gff for BO23393.complete
Subject Subject Range Query Range Percent Splice Strand
Sgf11-RB 149..736 17..606 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:45 Download gff for BO23393.complete
Subject Subject Range Query Range Percent Splice Strand
Sgf11-RB 149..736 17..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:45 Download gff for BO23393.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18681099..18681688 17..606 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:08 Download gff for BO23393.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18674199..18674788 17..606 99   Minus

BO23393.pep Sequence

Translation from 16 to 622

> BO23393.pep
MSAANMPTTTGAQGSGNQVPTTSTTIVNHFRELIKEPKNLDEAANYLYQS
LLDDAVVGIFNETHHLRKSGNLAALDGVPEDSTYRMCEMPNLDIFGISTA
KKPMDCTCPNCDRLVAAARFAPHLEKCMGMGRISSRIASRRLATKEGATS
AHLHSSGNTGGTDDEDDVDWSSDKRRKKSNQNSRNNGSKKNNGKTFASFL
DH

BO23393.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Sgf11-PB 196 CG13379-PB 1..196 1..196 1034 100 Plus