BO23394.complete Sequence
1585 bp assembled on 2010-05-05
GenBank Submission: KX798508
> BO23394.complete
GAAGTTATCAGTCGACATGAATAGGTTTTGGATAATCGCTTTACTTTTAG
GATTACAGCAAACAAAGCCAATAAATGGACAATCGGATGTGCTGGTGAAT
CTAGTGGTGCCGCGATATGTGGAGCGCGGATCGAGTGCCACCTTCAAATG
CACGCACAATGTCCGGCCGGAAATACTGTTCAAGGTTACATGGCTGAAGG
TTGACAAGGGCAAGTTCTTTGAATTCATAAACGGACGAAATCCGCCATTC
CGTAACTCAACCATCGAGGGAGCCGAAATCGACTGGGACAATTCCAACGA
GCAGCAGGTGACACTGAAGGATGTCCAGTTCGATCTATCCGGCCAATTCT
ACTGCGAGGTCTCCACGGACACCCCCATTTTTACCAAGGCCAGCGCCGAT
GAGCTGATGAGCGTGTTCTTGCCCCAGACGGGTCCGCCCACCATTAAGTT
TCGCAAGCGAACGCCCTTCGCGGTGGGCGAGAAACTTTTCGCCCTGTGCA
ACACCACCCGCGGCCGGCCTGCGCCGCACATCACGTGGCTAATCAATGGG
AAAAAGGTGGAGGACAGGTACGTGCGCACCCACCACGTGTTCTCCTTCAA
TGGGAAGCACCAGCACCAGCGTCGCACGCAGCAGCAGCAGCAGACGCAGC
TGAGTCAGCAGCAGCTGCAGCAGCAGTATTTCCAGCAGCAGTACTTCAAC
CAGTACCATCAGCAGTATCACATCCCCGTTGGCCAATTCATGGATCGCTA
CGACAAAAGCCTACGATGGCCAGCAGGAGCACGAGCGGATGAGTTCCCGC
ACTTTTTGTCGCACCACCATGAGGGGCACGGTCACCACGGTAGCCTGTAC
AACAATCCGTTTGGATCGCTGGCCAACTACCATGACGTGGGCGAGTTCCA
CGAGGTGCATCAGCGCAACTACGACAGCAACAAGAAGAACATGGAGCTGA
AGAAGCAGCAGCAGATGGAGATGAAGAAGCACAGGAACAGCAACCGCAAG
TATCGGCGCCACATAAACGAGAACGCCCTGGGCATCATTCGCAGCACCCT
GAACAGCGGCGGCTTCGGTCCTCAGGCTCCCAACATGAACAAGGAGCTGG
GCATCCCATCAAACGCTGGACCCATGAACCAGCTGGCAGCGGGCTACCAG
CGACCGCTTTCGCATCCAGGCGGAGGAAGCGGGGTGGCGGCTGCAGCGGC
CGCAGTTACTGCCGCCCAGCAGGAGAAGGGCATGTTCAGCATCAGCCAGC
TGAACATCGAGCTCACCGAGGAGCACGTGGGCAGCAACAGTCGCATGGAG
ATCACCTGCCTGTCCACGATACCGGCGACTGTGGGCCAGGGTGAGCAGTA
CGCCGACTACAAGACTTACTCAGTGAAAGTTGAGGTGGAGCGACAATTGG
CCTCCTCTACGTCGACGGCTTCGCCGAGCATCGGAATGGCGGCGCTGGGC
AATGGCAACGGACATGGCAACGAGACCTCCGCCGGACGGAGGGCACATGG
TACGGTAGTGACGCACTTGTGGTCGCTAGCCCAGCTCATGCTGCTCGTCC
TGCTGCCCCTCAGCTACGCAAGCTTTCTAGACCAT
BO23394.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-VII-RD | 1554 | CG42242-PD | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-VII-RD | 6138 | CG42242-RD | 533..2083 | 17..1567 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26650988..26651390 | 1384..982 | 2000 | 99.8 | Minus |
| 3R | 32079331 | 3R | 26662090..26662329 | 794..555 | 1185 | 99.6 | Minus |
| 3R | 32079331 | 3R | 26661534..26661731 | 985..788 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 26649337..26649526 | 1567..1378 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 26662989..26663128 | 559..420 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 26663217..26663352 | 419..284 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 26666780..26666891 | 186..75 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 26663598..26663698 | 283..183 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 26681377..26681434 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4490..4561 | 914..987 | 122 | 64.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 10588..10628 | 983..943 | 115 | 75.6 | Minus |
BO23394.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:21 Download gff for
BO23394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VII-RD | 533..2083 | 17..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:08 Download gff for
BO23394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VII-RD | 533..2083 | 17..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:31 Download gff for
BO23394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VII-RD | 533..2083 | 17..1569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:31 Download gff for
BO23394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26662992..26663128 | 420..556 | 100 | <- | Minus |
| 3R | 26663217..26663352 | 284..419 | 100 | <- | Minus |
| 3R | 26663598..26663696 | 185..283 | 100 | <- | Minus |
| 3R | 26666782..26666891 | 75..184 | 100 | <- | Minus |
| 3R | 26681377..26681434 | 17..74 | 100 | | Minus |
| 3R | 26649335..26649524 | 1380..1569 | 98 | <- | Minus |
| 3R | 26650993..26651387 | 985..1379 | 100 | <- | Minus |
| 3R | 26661535..26661730 | 789..984 | 100 | <- | Minus |
| 3R | 26662096..26662327 | 557..788 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:08 Download gff for
BO23394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22492504..22492613 | 75..184 | 100 | <- | Minus |
| arm_3R | 22507099..22507156 | 17..74 | 100 | | Minus |
| arm_3R | 22475057..22475246 | 1380..1569 | 98 | <- | Minus |
| arm_3R | 22476715..22477109 | 985..1379 | 100 | <- | Minus |
| arm_3R | 22487257..22487452 | 789..984 | 100 | <- | Minus |
| arm_3R | 22487818..22488049 | 557..788 | 100 | <- | Minus |
| arm_3R | 22488714..22488850 | 420..556 | 100 | <- | Minus |
| arm_3R | 22488939..22489074 | 284..419 | 100 | <- | Minus |
| arm_3R | 22489320..22489418 | 185..283 | 100 | <- | Minus |
BO23394.pep Sequence
Translation from 16 to 1585
> BO23394.pep
MNRFWIIALLLGLQQTKPINGQSDVLVNLVVPRYVERGSSATFKCTHNVR
PEILFKVTWLKVDKGKFFEFINGRNPPFRNSTIEGAEIDWDNSNEQQVTL
KDVQFDLSGQFYCEVSTDTPIFTKASADELMSVFLPQTGPPTIKFRKRTP
FAVGEKLFALCNTTRGRPAPHITWLINGKKVEDRYVRTHHVFSFNGKHQH
QRRTQQQQQTQLSQQQLQQQYFQQQYFNQYHQQYHIPVGQFMDRYDKSLR
WPAGARADEFPHFLSHHHEGHGHHGSLYNNPFGSLANYHDVGEFHEVHQR
NYDSNKKNMELKKQQQMEMKKHRNSNRKYRRHINENALGIIRSTLNSGGF
GPQAPNMNKELGIPSNAGPMNQLAAGYQRPLSHPGGGSGVAAAAAAVTAA
QQEKGMFSISQLNIELTEEHVGSNSRMEITCLSTIPATVGQGEQYADYKT
YSVKVEVERQLASSTSTASPSIGMAALGNGNGHGNETSAGRRAHGTVVTH
LWSLAQLMLLVLLPLSYASFLDH
BO23394.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-VII-PD | 517 | CG42242-PD | 1..517 | 1..517 | 2750 | 100 | Plus |
| beat-IIIc-PB | 361 | CG15138-PB | 27..189 | 26..189 | 240 | 30.3 | Plus |
| beat-IIIc-PA | 383 | CG15138-PA | 27..189 | 26..189 | 240 | 30.3 | Plus |
| beat-Ia-PA | 427 | CG4846-PA | 15..192 | 7..191 | 228 | 31.7 | Plus |
| beat-Ia-PB | 437 | CG4846-PB | 15..192 | 7..191 | 228 | 31.7 | Plus |
