Clone BO23477 Report

Search the DGRC for BO23477

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:234
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG31677-RA
Protein status:BO23477.pep: Imported from assembly
Sequenced Size:508

Clone Sequence Records

BO23477.complete Sequence

508 bp assembled on 2010-03-31

GenBank Submission: KX793816

> BO23477.complete
GAAGTTATCAGTCGACATGCAAATTAACGCTCGAGATGGGATTCAAATGA
ATAAGGCTCCTGGCCAGAATAGAATATTGATGTTATCCCCAGCTAGACCA
GTTAGCTGCCGACGTTGTGTGGTTATCAATATGGCCAATATTCCAATCCA
CAGCACATCCGCACATCAGCTGAGATACAAAGAGCCACACTCGCATATTG
TATCTGCATTTATGAAAATGCAAACTACAAGTACGGGGTCGGGGAAAACG
CCAGCTGAAACTATCAAAATGCATGCCAAGAGGCAAACAACAAAAGCAGG
CAACACGAGCTGCCGCAACATGGCAAACATGAAACCGAAACCGAAAACTG
TAACTAAAACTGCGGCCAAAATCACCGCCCATGCCACCCACTCGAATGCT
AACTTCAGGCAGCCAAAACGGGCAGCAAAAAAGCGAGAACGGGCGAAATT
TGCATGCATATTTACAAACTTTCGTTCGGAAAAGTCAGAAGCAAGCTTTC
TAGACCAT

BO23477.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31677-RA 477 CG31677-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31677-RA 662 CG31677-RA 97..570 17..490 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20603627..20604100 490..17 2370 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:35:42 has no hits.

BO23477.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:16 Download gff for BO23477.complete
Subject Subject Range Query Range Percent Splice Strand
CG31677-RA 97..570 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:06 Download gff for BO23477.complete
Subject Subject Range Query Range Percent Splice Strand
CG31677-RA 97..570 17..492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:24 Download gff for BO23477.complete
Subject Subject Range Query Range Percent Splice Strand
CG31677-RA 97..570 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:24 Download gff for BO23477.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20603625..20604100 17..492 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:06 Download gff for BO23477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20603625..20604100 17..492 99   Minus

BO23477.pep Sequence

Translation from 16 to 508

> BO23477.pep
MQINARDGIQMNKAPGQNRILMLSPARPVSCRRCVVINMANIPIHSTSAH
QLRYKEPHSHIVSAFMKMQTTSTGSGKTPAETIKMHAKRQTTKAGNTSCR
NMANMKPKPKTVTKTAAKITAHATHSNANFRQPKRAAKKRERAKFACIFT
NFRSEKSEASFLDH

BO23477.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31677-PA 158 CG31677-PA 1..158 1..158 820 100 Plus