BO23505.complete Sequence
2020 bp assembled on 2010-05-05
GenBank Submission: KX798831
> BO23505.complete
GAAGTTATCAGTCGACATGGAGTTGGCCAAGATGCCGCGGCGCCTGATCT
TGCTGGCCCTGCTCATCTGTTTGCCGGCCATCAGAGGGCAGGCGGAGGAG
ACATCAATATTAAACAGCAATGGAACAAATGGGCGAGCATTTCAAAGGAC
TCAATCAAGGCGCGAGGCATTAATTCCGGCGACAACGCAAATGGCCCAGA
CGCTGGACAAAGCCAGCGCATTTAGGCCAACAATGGCTGCAGCTCTGGAT
GCAGCGGCTCCGAATCGCTCCAGCAACAATGTAGCCATTAATAACATTAG
CAACAATGGCGATCAGCGACTGAGGCTGACCGCTGCCCTCGAGGCGAATC
TGATTATGAGCAATCGGAATGTCCAGGAGCAGCACAGCTATAGAATCACG
CAGGACAACGCCACATCTGCAGCTTCGATTGCCCCGAATGGAACGGCATT
TGGGGATGCCCCCTCAATCCCAATAGGAGTAGCTCCAGCGACAACAACAA
CAATTGATCCTGCCACAACGACGCCAACAACAACAACGAGGCGTACAACA
CGCCGTCCGGTGGCAACAACAACGCTGAAGCCACCGCCAACAATAGATGA
TTACCAGACAATAATTAGCCAGGCGGGCACCCATGCCTATCTGCCGTGCA
ATGTCAAGCAGCTGGTGAAGAAGCCGATATCCTGGCTGCGGATGAGGGAC
GGGCACATCCTTACCGTAGACCAGACCACCTTCATCGCGGATCAGCGCTT
TCAGTCCGTGTTCTCGCCGAATCCTGAACGTTGGTCCCTCCAGATCAAGT
ACGTGCAGCTGAAGGACGAAGGAACCTATGAGTGTCAGGTGTCCACGGAG
CCCAAGGCCAGTGCCATTGTCCATCTAAGGATTGTGGAGCCGAAAACCGA
ATTAATTGGCGAGTCAACGCGACATGTGAAGGCCGGAAGTCAAGTGAAAT
TGCGTTGCATAATTAGCCAGGCTCTGGAGCCGCCGCTTTTCATTAATTGG
TTTTACAATCAGAAGCAAATCTATTTGCATAATCGTCGCGGTTGGCGTAC
GGAAATTGAACGAATCGATCTGCCAGCGGAAGTGCCAACCACCAGCACCA
CCACCACAACGACAACAACAACCGCCAGCACCACGACCACGACCACCAGC
ACAACGCCAGCGACACCATCGACAACGGCCACAGGATCAACAGAAGGCGC
CACATCCTCGGAGACGCTTAATGGCCTGGTAACCATAACACGTTCATATA
TTCTAGATGCCATATCCCAGAATGATGTTTCCGAACTGGGAGCCGCTGCT
GGAGTGGCTGTTGCAACGGAGACGTCAACAGCTCAGCTGCTTACCGAAGT
GGAGGCAACGTCTTCGACTTCTGGGACGTCGACAGGAGCAGGACTCCTTG
CCTCCACCAGTGCTGCATACGCAGCAGGAGCTGCAGCAGGCATAACTACT
GCTGCGACAGGTGACTCCGCGGCAACAGCAGCAACAACCAGCGCCTGGCT
GACAACAATGGATGCTGAGGCGGCAACAACTGCGGCCACAACAACGACAA
CCATGCTGCCAAGCAGCAGTTTCATTAAGCAGATAACGACGGCTTCTCTC
ATCATTCCGGCCGTAGTCAAACTGGATTCCGGCAACTACACGTGCAGCCC
CTCGAACAGTGCGCCCCGTACCATTGTCCTCCACGTGCTGAACGGTGAAT
ATTCCGCCTCGGCCATTAAGTCGGGCAGTGTCAGCTGGAGTGCGCTAATT
GGATGTCACGGCTATTTGCACTGGCGGAATGTTTCAACGCTTCTGACACT
TTTGTGGATTATTAAATTTGCACTGGCCAGGGACATCTGCCAGCCGAATG
CCACCAGCAAAGCCACCACAAGGACATCGCTTCTACGCGCAGGCGATGGA
GCAACAGCAGATGTGACAAGGGAAACAGGACCCAAATCAGGGGCCAGTTT
CCACAGGGTCAGCAGCTCAATTAGTGCCACCAAAGTGGCCGAGGACAAGA
CTGCAAGCTTTCTAGACCAT
BO23505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr15-RB | 1989 | CG10095-PB | 1..1986 | 17..2002 | 9930 | 100 | Plus |
| dpr15-RA | 1989 | CG10095-PA | 1..1986 | 17..2002 | 9930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr15-RB | 3474 | CG10095-RB | 499..2484 | 17..2002 | 9930 | 100 | Plus |
| dpr15-RA | 3490 | CG10095-RA | 515..2500 | 17..2002 | 9930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12144137..12144843 | 1588..882 | 3520 | 99.9 | Minus |
| 3R | 32079331 | 3R | 12150371..12150948 | 654..77 | 2890 | 100 | Minus |
| 3R | 32079331 | 3R | 12139823..12140131 | 2002..1694 | 1545 | 100 | Minus |
| 3R | 32079331 | 3R | 12145237..12145471 | 887..653 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 12143421..12143529 | 1696..1588 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 12156109..12156169 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 11:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2404..2920 | 1088..1574 | 192 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6665..6831 | 1422..1583 | 182 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2538 | 1415..1651 | 175 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2549 | 1421..1565 | 173 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2510 | 1400..1569 | 170 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6924 | 1422..1594 | 169 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6851 | 1417..1551 | 158 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6904 | 1400..1585 | 151 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6905 | 1380..1551 | 138 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1150 | 1467..1553 | 136 | 64.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1139 | 1400..1488 | 134 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2488 | 1473..1640 | 133 | 58.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8586..8664 | 1475..1553 | 124 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6850 | 1434..1569 | 115 | 57.7 | Plus |
BO23505.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:04 Download gff for
BO23505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr15-RA | 515..2500 | 17..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:27 Download gff for
BO23505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr15-RA | 515..2500 | 17..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:05 Download gff for
BO23505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr15-RA | 515..2500 | 17..2004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:05 Download gff for
BO23505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12143423..12143528 | 1589..1694 | 100 | <- | Minus |
| 3R | 12139820..12140130 | 1695..2004 | 99 | <- | Minus |
| 3R | 12144137..12144837 | 888..1588 | 100 | <- | Minus |
| 3R | 12145237..12145471 | 653..887 | 100 | <- | Minus |
| 3R | 12150373..12150947 | 78..652 | 100 | <- | Minus |
| 3R | 12156109..12156169 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:27 Download gff for
BO23505.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7965542..7965852 | 1695..2004 | 99 | <- | Minus |
| arm_3R | 7969145..7969250 | 1589..1694 | 100 | <- | Minus |
| arm_3R | 7969859..7970559 | 888..1588 | 100 | <- | Minus |
| arm_3R | 7970959..7971193 | 653..887 | 100 | <- | Minus |
| arm_3R | 7976095..7976669 | 78..652 | 100 | <- | Minus |
| arm_3R | 7981831..7981891 | 17..77 | 100 | | Minus |
BO23505.pep Sequence
Translation from 16 to 2020
> BO23505.pep
MELAKMPRRLILLALLICLPAIRGQAEETSILNSNGTNGRAFQRTQSRRE
ALIPATTQMAQTLDKASAFRPTMAAALDAAAPNRSSNNVAINNISNNGDQ
RLRLTAALEANLIMSNRNVQEQHSYRITQDNATSAASIAPNGTAFGDAPS
IPIGVAPATTTTIDPATTTPTTTTRRTTRRPVATTTLKPPPTIDDYQTII
SQAGTHAYLPCNVKQLVKKPISWLRMRDGHILTVDQTTFIADQRFQSVFS
PNPERWSLQIKYVQLKDEGTYECQVSTEPKASAIVHLRIVEPKTELIGES
TRHVKAGSQVKLRCIISQALEPPLFINWFYNQKQIYLHNRRGWRTEIERI
DLPAEVPTTSTTTTTTTTTASTTTTTTSTTPATPSTTATGSTEGATSSET
LNGLVTITRSYILDAISQNDVSELGAAAGVAVATETSTAQLLTEVEATSS
TSGTSTGAGLLASTSAAYAAGAAAGITTAATGDSAATAATTSAWLTTMDA
EAATTAATTTTTMLPSSSFIKQITTASLIIPAVVKLDSGNYTCSPSNSAP
RTIVLHVLNGEYSASAIKSGSVSWSALIGCHGYLHWRNVSTLLTLLWIIK
FALARDICQPNATSKATTRTSLLRAGDGATADVTRETGPKSGASFHRVSS
SISATKVAEDKTASFLDH
BO23505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr15-PB | 662 | CG10095-PB | 1..662 | 1..662 | 3323 | 100 | Plus |
| dpr15-PA | 662 | CG10095-PA | 1..662 | 1..662 | 3323 | 100 | Plus |
| dpr11-PC | 360 | CG33202-PC | 69..346 | 131..417 | 505 | 40.6 | Plus |
| dpr11-PB | 360 | CG33202-PB | 69..346 | 131..417 | 505 | 40.6 | Plus |
| dpr17-PE | 508 | CG31361-PE | 259..411 | 199..349 | 468 | 56.9 | Plus |
