BO23508.complete Sequence
463 bp assembled on 2010-04-13
> BO23508.complete
GAAGTTATCAGTCGACATGTCGTTTAATATCATGCAAAAGCTGACCATGC
AGTGCCTGAAGGCAGACCAGCCGCTGATGACCACCGTGCGCAATGCCAGC
AAGAAAACCGGCGGAAGTACGAGGAATAAGAAGGGCCATGCGAGGCCCAA
ACATCGCGGATGGCGCGTCCAGGATGGGCACCACGTCTCCGAGGGCACAA
TACTGGCCACCCAGCTCACAACGCGCTTTCATCCGGGCCTGAATGTGGGC
TTTGGCCGCAATGGAACCCTTTTCGCCATGGAGCACGGCAAGGTTTATGT
GACCTGCGAGGCCATCGATCCCAACTGGGACCACACCTGGATTCAGCGGA
ACTACGCCGGTCGCCAGGGCCAGAACATCTACAAGAAGTTCTTCAATGTT
GTGCCCGAAAATCAGCATCAGCGATTTCGTCTAGTGGAGGAAATCGCAAG
CTTTCTAGACCAT
BO23508.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL27-RC | 417 | CG33002-PC | 1..414 | 32..445 | 2070 | 100 | Plus |
| mRpL27-RB | 417 | CG33002-PB | 1..414 | 32..445 | 2070 | 100 | Plus |
| mRpL27-RA | 417 | CG33002-PA | 1..414 | 32..445 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL27-RC | 547 | CG33002-RC | 92..520 | 17..445 | 2145 | 100 | Plus |
| mRpL27-RB | 896 | CG33002-RB | 56..484 | 17..445 | 2145 | 100 | Plus |
| mRpL27-RA | 511 | CG33002-RA | 56..484 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4459007..4459207 | 445..245 | 1005 | 100 | Minus |
| 2L | 23513712 | 2L | 4459263..4459429 | 247..81 | 835 | 100 | Minus |
| 2L | 23513712 | 2L | 4459484..4459547 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:24:53 has no hits.
BO23508.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:50 Download gff for
BO23508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL27-RA | 1..414 | 32..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:25 Download gff for
BO23508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL27-RA | 56..484 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:12 Download gff for
BO23508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL27-RA | 56..484 | 17..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:12 Download gff for
BO23508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4459005..4459207 | 245..447 | 99 | <- | Minus |
| 2L | 4459266..4459429 | 81..244 | 100 | <- | Minus |
| 2L | 4459484..4459547 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:25 Download gff for
BO23508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4459005..4459207 | 245..447 | 99 | <- | Minus |
| arm_2L | 4459266..4459429 | 81..244 | 100 | <- | Minus |
| arm_2L | 4459484..4459547 | 17..80 | 100 | | Minus |
BO23508.pep Sequence
Translation from 16 to 463
> BO23508.pep
MSFNIMQKLTMQCLKADQPLMTTVRNASKKTGGSTRNKKGHARPKHRGWR
VQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKVYVTCEAI
DPNWDHTWIQRNYAGRQGQNIYKKFFNVVPENQHQRFRLVEEIASFLDH
BO23508.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL27-PC | 138 | CG33002-PC | 1..138 | 6..143 | 756 | 100 | Plus |
| mRpL27-PB | 138 | CG33002-PB | 1..138 | 6..143 | 756 | 100 | Plus |
| mRpL27-PA | 138 | CG33002-PA | 1..138 | 6..143 | 756 | 100 | Plus |
