Clone BO23511 Report

Search the DGRC for BO23511

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:235
Well:11
Vector:pDNR-Dual
Associated Gene/Transcripttomboy20-RA
Protein status:BO23511.pep: Imported from assembly
Sequenced Size:475

Clone Sequence Records

BO23511.complete Sequence

475 bp assembled on 2010-04-13

GenBank Submission: KX794381

> BO23511.complete
GAAGTTATCAGTCGACATGATTGGAGTCTCGGGAACTTTCAAGGTGCTGG
CGGCCATATCGGGTATACTCTTCATGGGCTATTGCGTATATTTCGACAAA
CAGCGTCGGAGTGATCCAGATTTCAAGAGGAAGTTGCACGAGCGCAGGAT
TCAACGCTCATTGGCATCCGTGAAGTCCACGGCATCGGTTTCCATGAGCG
AGCGGGACGTCGAAGTGTACTTCATGACCCAGATACACAAGGGCGAGACC
CTGATCACAAACGGCGATGTTGAGGCCGGCGTGGAGCATCTAATCAACGC
GATACTCGTCTGCGGCCAGCCGTCAAAACTGTTGCAGTTGCTCCAGAGCA
CCTTGCCCATGGATATTTTCACCACAATGCTGATCAAGATGCACGCCTAC
GAGGCCTCGCAGCGCTGTTTGCCTGTTTTAGTGGATGATGAGGCTACCAG
TAGCCTTGCAAGCTTTCTAGACCAT

BO23511.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
tomboy20-RA 444 CG14690-PA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
tomboy20-RA 681 CG14690-RA 106..546 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10735412..10735852 457..17 2205 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:25:35 has no hits.

BO23511.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:53 Download gff for BO23511.complete
Subject Subject Range Query Range Percent Splice Strand
tomboy20-RA 106..546 17..459 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:42 Download gff for BO23511.complete
Subject Subject Range Query Range Percent Splice Strand
tomboy20-RA 106..546 17..459 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:32 Download gff for BO23511.complete
Subject Subject Range Query Range Percent Splice Strand
tomboy20-RA 106..546 17..459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:32 Download gff for BO23511.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10735409..10735852 17..459 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:42 Download gff for BO23511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6561131..6561574 17..459 99   Minus

BO23511.pep Sequence

Translation from 16 to 475

> BO23511.pep
MIGVSGTFKVLAAISGILFMGYCVYFDKQRRSDPDFKRKLHERRIQRSLA
SVKSTASVSMSERDVEVYFMTQIHKGETLITNGDVEAGVEHLINAILVCG
QPSKLLQLLQSTLPMDIFTTMLIKMHAYEASQRCLPVLVDDEATSSLASF
LDH

BO23511.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
tomboy20-PA 147 CG14690-PA 1..147 1..147 738 100 Plus
Tom20-PB 171 CG7654-PB 11..130 10..128 328 47.5 Plus
Tom20-PA 171 CG7654-PA 11..130 10..128 328 47.5 Plus