Clone BO23512 Report

Search the DGRC for BO23512

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:235
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS18A-RA
Protein status:BO23512.pep: Imported from assembly
Sequenced Size:499

Clone Sequence Records

BO23512.complete Sequence

499 bp assembled on 2010-04-13

GenBank Submission: KX796401

> BO23512.complete
GAAGTTATCAGTCGACATGTCCTTTGTGTTGCAATTGGCCACCAGGACAG
TACGAAGTACCATTGCTCAGGTGCGTGGCGTAGCCACCACAATGCCAAGG
CAAATTAAAGAGATTCATGAGAAGCAGGAGAACAGTGTAAAGATCTTCGA
GGGCGTTAATGTGGAATCGCCGCGTGCTCACCTGATGCTTAAATCCGCCT
GCCAGACCAAGTTTTGCCCGGAATGCACCTTGGGCCTGGACATCAAGCAC
ACGGATGTGCTAATCCTGTCGCAGTATGTCCGTTCCGACGGCTGTATGCT
GCCCAGAAGGATCACCGGACTTTGCCACCGGCAACAAAAGAAGATGGGCA
CTCTGGTAACCATGGCTCAGAAGGCGGGACTGATGCCAAATCTGGCGCCC
GAGTGGAGTAAAAGAGATCCCAAGAAGCGCTTCGGCTGGCGCAAGTTCAA
CAAGTACTTCCTGGAGTCCACAATTAAATACGCAAGCTTTCTAGACCAT

BO23512.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18A-RA 468 CG31450-PA 1..465 17..481 2310 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18A-RA 581 CG31450-RA 84..550 15..481 2320 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8561948..8562315 481..114 1840 100 Minus
3R 32079331 3R 8562412..8562510 113..15 480 99 Minus
Blast to na_te.dros performed on 2014-11-27 10:25:51 has no hits.

BO23512.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:54 Download gff for BO23512.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18A-RA 76..540 17..483 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:49 Download gff for BO23512.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18A-RA 86..550 17..483 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:40 Download gff for BO23512.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18A-RA 86..550 17..483 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:40 Download gff for BO23512.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8561946..8562315 114..483 99 <- Minus
3R 8562412..8562508 17..113 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:49 Download gff for BO23512.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4388134..4388230 17..113 98   Minus
arm_3R 4387668..4388037 114..483 99 <- Minus

BO23512.pep Sequence

Translation from 16 to 499

> BO23512.pep
MSFVLQLATRTVRSTIAQVRGVATTMPRQIKEIHEKQENSVKIFEGVNVE
SPRAHLMLKSACQTKFCPECTLGLDIKHTDVLILSQYVRSDGCMLPRRIT
GLCHRQQKKMGTLVTMAQKAGLMPNLAPEWSKRDPKKRFGWRKFNKYFLE
STIKYASFLDH

BO23512.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18A-PA 155 CG31450-PA 1..155 1..155 812 100 Plus