Clone BO23515 Report

Search the DGRC for BO23515

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:235
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG5385-RA
Protein status:BO23515.pep: Imported from assembly
Sequenced Size:646

Clone Sequence Records

BO23515.complete Sequence

646 bp assembled on 2010-04-13

GenBank Submission: KX793899

> BO23515.complete
GAAGTTATCAGTCGACATGGATAGTAATGATTCAGGAACAGCAGATGCGA
ATTCTGCACGGCAGTCGCTTGCGTTGCGGCGGGAATTGCGCAGAAAGAAA
ATATTGGAAGCGTCCAAGGCACGACTGGACAAATTGAATAGCAGATCGAC
GTCGGCGTTTCAGAATGAAAACCTCGATGGTGAACCCTCAAATACGCAAT
ATTCCGATCCGGAGGTGGAGCCGGATATTCCAATAAGGCGTTCATTTCTG
CCAGAACAACCTGCGCCCCAAAGAACCACGTCACGAAATGCATTTCTTAA
GAGCAGAGTTCACATTATTTTGGCGGCTTGCTTTGGATTTCTTTTGGCTC
TTTACACGAACACCAGTGTTTTCATTCCCGTTCTGCTTTTTGTGATTGCA
GAGCTTGCATTTCTGCAGAATTACAAAGAAGACCATTTACCGGCCAGCAT
GGGACCCTTGTTACTTATGTTCATCAATCCGAATATTACCAGCAAAATTA
AGCAGTTTAGCAGTATATTTTTTATTCTTCAGTCATTGTTGGGTGATCTT
GCGATAACCGTTTGTGTTGTTTGTTCAGGAAGCATGCTCTTACTAAATTT
TAGACCCGAATATGCTACAATTGTTAAAGCAAGCTTTCTAGACCAT

BO23515.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)SH0834-RA 615 CG5385-PA 1..612 17..628 3030 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)SH0834-RA 936 CG5385-RA 42..653 17..628 3030 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10311333..10311785 628..176 2250 99.8 Minus
2L 23513712 2L 10311899..10312058 176..17 785 99.4 Minus
Blast to na_te.dros performed on 2014-11-27 10:27:14 has no hits.

BO23515.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:59 Download gff for BO23515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5385-RA 12..623 17..630 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:51 Download gff for BO23515.complete
Subject Subject Range Query Range Percent Splice Strand
CG5385-RA 42..653 17..630 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:15 Download gff for BO23515.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)SH0834-RA 42..653 17..630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:15 Download gff for BO23515.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10311331..10311784 177..630 99 <- Minus
2L 10311899..10312058 17..176 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:51 Download gff for BO23515.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10311331..10311784 177..630 99 <- Minus
arm_2L 10311899..10312058 17..176 99   Minus

BO23515.pep Sequence

Translation from 16 to 646

> BO23515.pep
MDSNDSGTADANSARQSLALRRELRRKKILEASKARLDKLNSRSTSAFQN
ENLDGEPSNTQYSDPEVEPDIPIRRSFLPEQPAPQRTTSRNAFLKSRVHI
ILAACFGFLLALYTNTSVFIPVLLFVIAELAFLQNYKEDHLPASMGPLLL
MFINPNITSKIKQFSSIFFILQSLLGDLAITVCVVCSGSMLLLNFRPEYA
TIVKASFLDH

BO23515.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)SH0834-PA 204 CG5385-PA 1..204 1..204 1021 100 Plus