BO23516.complete Sequence
1471 bp assembled on 2010-04-13
GenBank Submission: KX797885
> BO23516.complete
GAAGTTATCAGTCGACATGTCGACACGGAAAAAGATGGGGAGCTGCTCCA
ATGCCATCGAGAAGGGAAATTCCCCGATAGGTAATTGCTGGCCGACCATC
CTGACGCTTCTCATCGTGGCCAACTTGGTCGACGCACTGAAGACCGGGGA
ATCCATCCAGTTGGCAACCGGGAGCCAGCCATCACTGAGCATAAACAATG
CGGACGACAGCAGCCTGGAGCAGCTCATCGAGATGAGGCTGAATGAGTCT
GCGTCCGCATCCTACCAGAACAACCAGTCAGCCAGCCAGGAGCTGTTGTC
CCGGAAACGACGTTATTTGGTATTTCCGGAAGGCAGCTCCTTTCAGATGG
TGTACGATGAGATTGTGGGAGTGGTGGACCACACGAACTACTTGATTCTG
GGCATTACGGTGGCCCTGGCCTGGGAGCTGCCCAGCAAGCCGCCCAGCGA
GGAGCTGGACGATCTGCTGACCAAGTTGGAGGACGGCACAATAGACATCA
GTCGCAACGACACAGTGTCGAACATAACCTATGTGGATGTGGATGCAGAT
GCCACGACGACCACGACGAGCAGGCCGGCGGACTACAAGCCCAACTACAT
CAATTTGTCGAGTTACGGCTCCTCCTCCTCCTCCTCCTCCTCGAGTGGCA
GCAACTCCTACTACAGCCTTTCGCCCGTTTTCCGCCCTCCGATGCATCCG
TCGCATCGATATGCGGATAGTTATTACTCCTCACGTCCAAAGGGGGGCAG
GCGGAAGGACAATCACTATTACTACAGTCGGCCCGGGGTCAGCTCCAGCT
CCAGCAATCCATTCGCCAAGTGGACGAGACCTTACTCTCACGCCCAGAAC
TCACGCTATCCCTACTGGGCTTTAAACTCAAGACTCAAAGATAGATACTA
CGGCTACAAAAGTCAACAGGCAGCACCGCCAGCGGCGCAGCGACGACAGG
ACAGTACCACCACCACCAGCGCACCCACCACCAGTCGACCCACTCGAAGG
CCAGCTCCTCGACATCATCGCATATATCCGGTGTTTGGCAAGCGCAGCAT
TCCGGATGCAGCCAATCCACATAAACGCCAGCGACGCAGTGGAGTGGCCA
CTGAGCATGAGGACAAGATGAGCCGCCTGGAGCAACTCCAGATCAAGCAC
CATCGCAGAAGCAGACAGTCCTTGTACGAGCGAATCGAGAAGTATCTGGA
CAAACGAGGTCACCATGGCCACCACTGCGTATTGCGAACCCTCTGCGAAA
CGGGCCAGAAATCGACGGAGCATGAGCCCGGCACCTTCGTGGGCGAACTA
ATGCGTGCAGTGTTCACCCTTCCGGAAGCCATGGACAACGAACCGGTTGC
CTATCGCGACTCCCACTACGACAAGGCCCACGCATCCAAGGCGGACTGTG
CCGTCCTCTATCCGGAGTGCAAGCAGTCCATGTGGCAGGCCCAGTTCATA
CAAGCAAGCTTTCTAGACCAT
BO23516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17782-RA | 1440 | CG17782-PA | 1..1437 | 17..1453 | 7170 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17782-RA | 1484 | CG17782-RA | 27..1463 | 17..1453 | 7170 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24371649..24372181 | 882..350 | 2650 | 99.8 | Minus |
| 3R | 32079331 | 3R | 24372403..24372736 | 350..17 | 1670 | 100 | Minus |
| 3R | 32079331 | 3R | 24371197..24371519 | 1203..881 | 1615 | 100 | Minus |
| 3R | 32079331 | 3R | 24370772..24371025 | 1453..1200 | 1255 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:39:00 has no hits.
BO23516.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:08 Download gff for
BO23516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17782-RA | 27..1463 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:56 Download gff for
BO23516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17782-RA | 27..1463 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:31 Download gff for
BO23516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17782-RA | 27..1463 | 17..1455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:31 Download gff for
BO23516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24370770..24371021 | 1204..1455 | 99 | <- | Minus |
| 3R | 24371197..24371517 | 883..1203 | 100 | <- | Minus |
| 3R | 24371649..24372180 | 351..882 | 99 | <- | Minus |
| 3R | 24372403..24372736 | 17..350 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:56 Download gff for
BO23516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20196492..20196743 | 1204..1455 | 99 | <- | Minus |
| arm_3R | 20196919..20197239 | 883..1203 | 100 | <- | Minus |
| arm_3R | 20197371..20197902 | 351..882 | 99 | <- | Minus |
| arm_3R | 20198125..20198458 | 17..350 | 100 | | Minus |
BO23516.pep Sequence
Translation from 16 to 1471
> BO23516.pep
MSTRKKMGSCSNAIEKGNSPIGNCWPTILTLLIVANLVDALKTGESIQLA
TGSQPSLSINNADDSSLEQLIEMRLNESASASYQNNQSASQELLSRKRRY
LVFPEGSSFQMVYDEIVGVVDHTNYLILGITVALAWELPSKPPSEELDDL
LTKLEDGTIDISRNDTVSNITYVDVDADATTTTTSRPADYKPNYINLSSY
GSSSSSSSSSGSNSYYSLSPVFRPPMHPSHRYADSYYSSRPKGGRRKDNH
YYYSRPGVSSSSSNPFAKWTRPYSHAQNSRYPYWALNSRLKDRYYGYKSQ
QAAPPAAQRRQDSTTTTSAPTTSRPTRRPAPRHHRIYPVFGKRSIPDAAN
PHKRQRRSGVATEHEDKMSRLEQLQIKHHRRSRQSLYERIEKYLDKRGHH
GHHCVLRTLCETGQKSTEHEPGTFVGELMRAVFTLPEAMDNEPVAYRDSH
YDKAHASKADCAVLYPECKQSMWQAQFIQASFLDH
BO23516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17782-PA | 479 | CG17782-PA | 1..479 | 1..479 | 2526 | 100 | Plus |
| CG17781-PA | 429 | CG17781-PA | 66..427 | 94..473 | 411 | 30.6 | Plus |
| CG5768-PC | 262 | CG5768-PC | 146..236 | 373..461 | 151 | 38.5 | Plus |
