Clone BO23520 Report

Search the DGRC for BO23520

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:235
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptDip2-RA
Protein status:BO23520.pep: Imported from assembly
Sequenced Size:712

Clone Sequence Records

BO23520.complete Sequence

712 bp assembled on 2010-04-13

GenBank Submission: KX798974

> BO23520.complete
GAAGTTATCAGTCGACATGGCGACAAGGTCTTGTGCGTACAAGGACTGTG
AATACTATTACGTAGGCCACGAAAACGCGCTGACCAAAGGAAGAACCCTG
TTTGCCTTTCCCAAACAACCGCAAAGGGCGAGAATCTGGCACGAAAACGG
CCAAGTGCATCCAAAGATTCCCCATAGCCAGCTTTTTATGTGCTCCCTTC
ACTTTGACCGCAAGTTCATATCCTCCTCTAAGAACCGAACGCTCCTCGTC
GGCGAGGCAGTGCCGTTTCCGTACGAGGAAAGCAGTAGCAAGCCGGAGGA
GGAGCCCCAACAAGTGGCTTCCACTTCGCATGAGAGCTACTATATAAACC
TGAGCGACGATGAGCTCAGCATCAACAATGTGGACACTACCTCAGTTACT
ACAATTGACGCAGTCCACGATAGTCCACCGCAGAAGCGCCCGAAGGAATC
TTCCATTGTCATTGCTCTAAAGGAAGCTGTGAAAATGGAACCCAATCCGA
ATGCAGGCCGAGTTAGAGCAGAACCCGACAATATAGATACTACTGAAGTG
TCTGTGTTCAACTTCAAGGGACAGGAGTACGTACAAATGTCTATGGAGTA
TTACTTGCAGGAAAAGCGGAAAATGGCTAAACTTTTGCAAGACTATAAAA
ATGCTTTAAGAAGCATTAAGAAACATATTTCCCACCTTGACCTTGCAAGC
TTTCTAGACCAT

BO23520.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dip2-RA 681 CG9771-PA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dip2-RA 903 CG9771-RA 88..765 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4645181..4645568 404..17 1940 100 Minus
3R 32079331 3R 4644787..4645076 694..405 1450 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:28:15 has no hits.

BO23520.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:00 Download gff for BO23520.complete
Subject Subject Range Query Range Percent Splice Strand
Dip2-RA 27..704 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:04 Download gff for BO23520.complete
Subject Subject Range Query Range Percent Splice Strand
Dip2-RA 88..765 17..696 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:44 Download gff for BO23520.complete
Subject Subject Range Query Range Percent Splice Strand
Dip2-RA 88..765 17..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:44 Download gff for BO23520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4644785..4645076 405..696 99 <- Minus
3R 4645181..4645568 17..404 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:04 Download gff for BO23520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 470507..470798 405..696 99 <- Minus
arm_3R 470903..471290 17..404 100   Minus

BO23520.pep Sequence

Translation from 16 to 712

> BO23520.pep
MATRSCAYKDCEYYYVGHENALTKGRTLFAFPKQPQRARIWHENGQVHPK
IPHSQLFMCSLHFDRKFISSSKNRTLLVGEAVPFPYEESSSKPEEEPQQV
ASTSHESYYINLSDDELSINNVDTTSVTTIDAVHDSPPQKRPKESSIVIA
LKEAVKMEPNPNAGRVRAEPDNIDTTEVSVFNFKGQEYVQMSMEYYLQEK
RKMAKLLQDYKNALRSIKKHISHLDLASFLDH

BO23520.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dip2-PA 226 CG9771-PA 1..226 1..226 1185 100 Plus