Clone BO23521 Report

Search the DGRC for BO23521

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:235
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG8549-RA
Protein status:BO23521.pep: Imported from assembly
Sequenced Size:795

Clone Sequence Records

BO23521.complete Sequence

795 bp assembled on 2010-04-13

> BO23521.complete
GAAGTTATCAGTCGACATGTCCAAAATATTCACGCCCACAAATCAAATAC
GCCTCACAAATGTCGCCATTGTGAGGCTAAAAAAAGGTGGCAAGCGATTT
GAGATCGCCTGCTATAAAAATAAGGTTCTTTCGTGGAGGAGCAACAGCGA
AAAGGACATCGATGAGGTCCTGCAAACCCATACCGTGTTCACCAATGTCT
CCAAAGGACAGGCGGCCAAAAAGGACGAGCTGCAAAAGGCCTTCAATAAA
ACAGACGAGACTGAGATTTGCAAGGAGATCCTCAGCAAAGGAGAACTGCA
GGTGTCGGAAAAGGAGCGCCAAAGTTGTCTGGACACGCAACTAAATAGTA
TAGTTAATTCCGTGGCTGCGTTGTGTGTAAATCCAGAGACGCGTCGTCCA
TATCCCGCCTCCATCATCGAGAAATCCCTGAAGGATGCCCACTTCTCCGT
TAAGATGAACAGGAACACCAAGCAGAACACACTGGAGGCCATCAAGATTC
TCAAGGACCATATGCCCATCGAGAGGTCGCGCATGAAGCTGCGCGTTAGC
TTTGCTGGAAAGGAGGGCGGTGGCAAGCTCAAGGAATCGGTGGTCAAGTT
GGCCAACGCAGTGGAGCACGAGGAATGGGACGAGGCCACCTTGCACTTAA
CCTTGCTCATAGATCCTGGCCAATATCGTGTCATTGATGAGCTGGTAAGG
AACGAAACGAAGGGTAAGGGACTGCTGGAGCTGCTCGAGCTGAAGGAAGT
GGTGGAGAGCGAGGAACTCTTCGCAAGCTTTCTAGACCATTCGTG

BO23521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8549-RB 759 CG8549-PB 1..756 17..772 3780 100 Plus
CG8549-RA 759 CG8549-PA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8549-RB 882 CG8549-RB 40..795 17..772 3780 100 Plus
CG8549-RA 1037 CG8549-RA 195..950 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6753316..6753942 146..772 3135 100 Plus
3L 28110227 3L 6753107..6753237 17..147 655 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:29:04 has no hits.

BO23521.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:02 Download gff for BO23521.complete
Subject Subject Range Query Range Percent Splice Strand
CG8549-RA 195..955 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:11 Download gff for BO23521.complete
Subject Subject Range Query Range Percent Splice Strand
CG8549-RA 195..955 17..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:02 Download gff for BO23521.complete
Subject Subject Range Query Range Percent Splice Strand
CG8549-RA 195..955 17..779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:02 Download gff for BO23521.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6753107..6753237 17..147 100 -> Plus
3L 6753318..6753947 148..779 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:11 Download gff for BO23521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6746207..6746337 17..147 100 -> Plus
arm_3L 6746418..6747047 148..779 99   Plus

BO23521.pep Sequence

Translation from 16 to 793

> BO23521.pep
MSKIFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRSNSEKDIDE
VLQTHTVFTNVSKGQAAKKDELQKAFNKTDETEICKEILSKGELQVSEKE
RQSCLDTQLNSIVNSVAALCVNPETRRPYPASIIEKSLKDAHFSVKMNRN
TKQNTLEAIKILKDHMPIERSRMKLRVSFAGKEGGGKLKESVVKLANAVE
HEEWDEATLHLTLLIDPGQYRVIDELVRNETKGKGLLELLELKEVVESEE
LFASFLDHS

BO23521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8549-PB 252 CG8549-PB 1..252 1..252 1271 100 Plus
CG8549-PA 252 CG8549-PA 1..252 1..252 1271 100 Plus