BO23537.complete Sequence
1690 bp assembled on 2010-05-05
GenBank Submission: KX797978
> BO23537.complete
GAAGTTATCAGTCGACATGAAACTGTTTACCAACAAAAACCAGCGCAATG
CAAAGCTGTTGCGCAGCGCCGCCCTCGGGATGACCCTGCTGTTCTTCGGT
TCCCTGGTGATAATCTCGGATCCTCTTCAGAGCATCCTGGACACGCAATT
GAGCTTGAAACCCGGCACCCTGCTCCATCGACTTTGGCTTCTGCCACCGT
TGGACGTCTACATCAATGTATACATGTTTAACTACACCAATGTGGATGAG
TTCACGTCGGGCAGAGCATCCAAGTTGCAGCTCCAGGAGGTGGGTCCTTA
TGTCTACAAGGAGGTCTTGAGCAACCACAATGTCACCTACAATGAGTCCA
ACAATACCATCACGTATTCACCGAAACGCGAGTATGTCTTTGCACCAGAA
AGATCTGTGGGTGATCCCAAGATCGATCGCATCCGGGCGCCCAACATCCC
ACTGATGGGAGTGACCACTCTGGCATCAAGTCTATCGATGTTCGCCGCCC
TGGGTCTGAGTGCCATTACCAGGCAGCTGAACTCGCAGCCCATGCTGGAA
ATGAGCGTTCACGACTACATGTGGGGCTATGAGGATCACCTGGTAGAGCT
GGCCTCTCGGTTCGTGCCCAATTGGATTGACTTCTCCAGCTTTGGCATTA
TGGAGAAGCTCTTCCGAGAGGGAAATGAGAGCAATGTGTTCAACATGAAC
TTGCCGGAACCCAAGGACAAGTATGGAATGAGAATGACGGATGCTCCGCG
TGGTTATACCGTGGATAGCATCAATGGTGAACGCGGTTTCAAGGGTTGGC
AGTACAATGAGGAGACCAATGGAACCATGTGCAATCGCATCTGGGGCAGT
CATGATGCCACGCTCTTTCCGCTGGACATGGATGAGAACGACGAGTTCTT
TTTGTACAGGCGAACCTTCTGCCGCAGGTTGCCGGTGAAATTCAATCGCA
CCACCACCTTCAATGGCCTCGATGCCTTTGAGTTCGTAATGGAGCCGGAC
TCCTTCGACAGCGAGGTGGACAATGCCAACTCTTCGTGCTACTGCAAGAA
CAATCGTTGCCTCAAGAAGGGTGTTGGCAATGTGTCACCCTGTTACTACA
ACATTCCTTTAGCCATTACGTATCCGCATTTCATGCATGCCGATCCCAGT
CTGCTGGAGCCATTCGATGGACTGCAGCCGAATGTGTCGCGCTTCACCTC
CACCTTCGTGGTGCAACCGCAACTGGGAGCTCCGATGCAGGGCACCCACC
TGCGATTGCAGGCCAACCAGGTGGTGGGGAAGGTGAACTTCAATCGGATG
ATGACGCCCTTCGAGAACATGATCCTGCCGCTGCTGTGGGTGGATCTGAA
CATCGATGTCCTGTGCCTGACCCTGCGTCTGCTCATTCATGGCATCAAGT
GGGGCTTCCCGCTGCTGCAGTGGAGCGCTGCCTTGGGAATGCTGCTGGCC
GGCGTTTACCAGCTGTGCAGCGCCCTGTTGCTTTGCTTTTGGCCAACAGC
CAGGCAGTTCCAGAAGGTGGATCAAGTGGAACGCGGCACGGCGGTTCAGG
TGATTGGAGTTGGACTCGGTTTGGCCACCGGACTTCGAAAACCATCGATT
CATTTGGACCCTGAGGAGCAGCACCATCTGCTCCTCGGCGGCGGCAGCTT
CATTCCCAAGATGGCCAAGACGGCAAGCTTTCTAGACCAT
BO23537.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10345-RA | 1659 | CG10345-PA | 1..1656 | 17..1672 | 8280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10345-RA | 2423 | CG10345-RA | 538..2193 | 17..1672 | 8280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16598556..16599069 | 658..145 | 2570 | 100 | Minus |
| 3R | 32079331 | 3R | 16597303..16597756 | 1672..1219 | 2270 | 100 | Minus |
| 3R | 32079331 | 3R | 16597998..16598278 | 1100..820 | 1405 | 100 | Minus |
| 3R | 32079331 | 3R | 16598338..16598500 | 819..657 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 16597815..16597933 | 1219..1101 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 16599651..16599747 | 145..49 | 470 | 99 | Minus |
| 3R | 32079331 | 3R | 16604288..16604324 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:30:23 has no hits.
BO23537.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:07 Download gff for
BO23537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10345-RA | 465..2120 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:05 Download gff for
BO23537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10345-RA | 538..2193 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:39 Download gff for
BO23537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10345-RA | 538..2193 | 17..1674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:39 Download gff for
BO23537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16597301..16597755 | 1220..1674 | 99 | <- | Minus |
| 3R | 16597815..16597933 | 1101..1219 | 100 | <- | Minus |
| 3R | 16597998..16598278 | 820..1100 | 100 | <- | Minus |
| 3R | 16598338..16598498 | 659..819 | 100 | <- | Minus |
| 3R | 16598556..16599068 | 146..658 | 100 | <- | Minus |
| 3R | 16599651..16599742 | 54..145 | 100 | <- | Minus |
| 3R | 16604288..16604324 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:05 Download gff for
BO23537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12424060..12424220 | 659..819 | 100 | <- | Minus |
| arm_3R | 12423023..12423477 | 1220..1674 | 99 | <- | Minus |
| arm_3R | 12423537..12423655 | 1101..1219 | 100 | <- | Minus |
| arm_3R | 12423720..12424000 | 820..1100 | 100 | <- | Minus |
| arm_3R | 12424278..12424790 | 146..658 | 100 | <- | Minus |
| arm_3R | 12425373..12425464 | 54..145 | 100 | <- | Minus |
| arm_3R | 12430010..12430046 | 17..53 | 100 | | Minus |
BO23537.pep Sequence
Translation from 16 to 1690
> BO23537.pep
MKLFTNKNQRNAKLLRSAALGMTLLFFGSLVIISDPLQSILDTQLSLKPG
TLLHRLWLLPPLDVYINVYMFNYTNVDEFTSGRASKLQLQEVGPYVYKEV
LSNHNVTYNESNNTITYSPKREYVFAPERSVGDPKIDRIRAPNIPLMGVT
TLASSLSMFAALGLSAITRQLNSQPMLEMSVHDYMWGYEDHLVELASRFV
PNWIDFSSFGIMEKLFREGNESNVFNMNLPEPKDKYGMRMTDAPRGYTVD
SINGERGFKGWQYNEETNGTMCNRIWGSHDATLFPLDMDENDEFFLYRRT
FCRRLPVKFNRTTTFNGLDAFEFVMEPDSFDSEVDNANSSCYCKNNRCLK
KGVGNVSPCYYNIPLAITYPHFMHADPSLLEPFDGLQPNVSRFTSTFVVQ
PQLGAPMQGTHLRLQANQVVGKVNFNRMMTPFENMILPLLWVDLNIDVLC
LTLRLLIHGIKWGFPLLQWSAALGMLLAGVYQLCSALLLCFWPTARQFQK
VDQVERGTAVQVIGVGLGLATGLRKPSIHLDPEEQHHLLLGGGSFIPKMA
KTASFLDH
BO23537.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10345-PA | 552 | CG10345-PA | 1..552 | 1..552 | 2934 | 100 | Plus |
| CG40006-PA | 689 | CG40006-PA | 84..550 | 7..488 | 593 | 27.3 | Plus |
| emp-PE | 508 | CG2727-PE | 18..463 | 25..483 | 502 | 28.8 | Plus |
| emp-PD | 520 | CG2727-PD | 30..475 | 25..483 | 502 | 28.8 | Plus |
| emp-PA | 520 | CG2727-PA | 30..475 | 25..483 | 502 | 28.8 | Plus |
