BO23540.complete Sequence
1819 bp assembled on 2010-05-05
GenBank Submission: KX796472
> BO23540.complete
GAAGTTATCAGTCGACATGTTGTCGCTGTCATCGCCGCCGTGGCTCTTGC
TCCTCGTCCTTTTCTTCTTCGCAAATGGCTCGGCAACAGTGGTTTCCTTG
GCGGAGAATGTGACTCTGGCGACGTTACCATCCACCTCGCCAATTTCCGT
GAGCTTTAGCACGACCTCCTCGGTGGTGGCGCCCATTTCCACCGAATTGG
AGAATCAAACAGCCAGCAGCAGCAACCTTAATACAAACAACGAAGCCAGC
GATGAGCAAACTGGCAATAGCAACAGCAACACGAGCAGTCACAGCAGAAA
CATCAATGGTTTGCCCAGCAGCAACAGCAACATTGACAATGCCAACAGCA
ACTCAAGTTCCGTTTCCTCTTTGAGTACAACGACATCTGCCATTTCTGGT
GTAGATCAGCAGGAGTCCCTCATCCTGGCAACTCCCACTGCCCTGAATGG
CAGCGGTACACCGCCCGAGCATCAGACAATTGGTCAGGCACCGCCCACAA
AGGGTGAACAGGAGGCCATCCTGCGAGCTTTGGATTGGCTCAAGGAGAAG
AGGGCTTCGGACTACGGCTGGGGCAACGATACCCATGTGGTTATACTGGC
CAAAGAGCTTTCCGGCGGCCGAGATCCTAACGATAGTGTAGATGGTCATG
TGCAGGTCATCCAAGAGCTGGAGGATACGCTATCCGTGAAGGAAATGGAG
ATCGAGATCCTGGCCATGCTGGATCGCCATCATACACTCCCAAAGCCCCT
GGATCTCGACAAGCTGGCCAGATACGTCCTGGCCTTGGGTTCCCTGTGCA
AGGACCCGAAGCATTTCCATGGCCACGACTTGGTGGCCACACTGCAGCAT
CATGAGCCGGCCCAGGATATTGAGTTCGCACTAACCACTCTGTCGGCCTG
CAGTTCGGCGGCCCATGTAAGGAAACGTCAGATCCGACGGCTCCTGGACA
TTGCCAGCGGAGTGACGGACCAGAGCGTTGATGCCATTGCCATGGTAATT
CTAGCCTTGCGTTGCATCGTCACCGATCATCGCCATCGACATCTGCAACA
CTTTGTCCGACGACCGGCGAGGGGACTGGCCACTCTGCAGGATCAGCGCG
GCAGTTTCGGATCGCTTAGGAGCACAGCACTCGCCATGCAGGCTCTACAG
GATTTAGAGTACGATCCGGCTGGACATTGGAACCGTACAGCCGCCTCGCG
CTACATCCTGAGTCGCCAGCGAGCGGATGGAGGATGGAGCGAGGAACCGC
TGCAGGATGGCCAGGAACCCGACATCGGTGTGGGCCTCACGGCGGACATC
ATTCTCGCTTTGGGCTGGAAGGGATTGGGTGCAGTGCGGGCACTGCAATG
CGACCATGTGATACGCGAGAGCAGTGATCCTACGGAGAACGGCGAGCCAA
AGCTGGCGGTGCCCTTCGGACTTAGTTCCTCTGCAGAAGAGTCGGATGCC
AAGAACATCTCCTACACGTACACACTTTGGGTGGGATCCAATGTGACCGA
GTCCTTCTCCCTGTCACTCGTCTCACCCAAGAACACTAGCTTCTTTAAGG
CCATGACCCAAGCGGCCGAAATGGATCCCAGATTTATTTTCGAGGCTCGT
GAATGGCCCAATGGTCACTATGTGCACACCCTGTATGGCAAAAAGGAGGA
GCCTCGAGGGTATCACTACTGGCTGCTTTATCGATTGCCAGAGTTGCCCG
ATCCCAATAATACGCCCGGGAATCAGCTTATTGCGCCTGTTGGTGTGGAC
GAGCTAATGGTCGAGGATGGGGAGCATTATCTTTACTGGTACAAGAAGCT
CGCAAGCTTTCTAGACCAT
BO23540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3556-RB | 1788 | CG3556-PB | 1..1785 | 17..1801 | 8925 | 100 | Plus |
| CG3556-RA | 1788 | CG3556-PA | 1..1785 | 17..1801 | 8925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3556-RB | 3890 | CG3556-RB | 225..2009 | 17..1801 | 8925 | 100 | Plus |
| CG3556-RA | 2426 | CG3556-RA | 385..2169 | 17..1801 | 8925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4531310..4532678 | 17..1385 | 6845 | 100 | Plus |
| X | 23542271 | X | 4532855..4533051 | 1385..1581 | 985 | 100 | Plus |
| X | 23542271 | X | 4533260..4533345 | 1659..1744 | 430 | 100 | Plus |
| X | 23542271 | X | 4533117..4533199 | 1579..1661 | 415 | 100 | Plus |
| X | 23542271 | X | 4533524..4533583 | 1742..1801 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6922 | 193..412 | 217 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2394 | 263..352 | 216 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6899 | 214..352 | 210 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6872 | 214..352 | 209 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6914 | 214..352 | 200 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2445 | 209..352 | 197 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2415 | 264..352 | 195 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2537 | 214..392 | 194 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6878 | 214..352 | 193 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2466 | 178..352 | 192 | 59.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1168 | 255..358 | 186 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2427 | 222..352 | 174 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2406 | 265..352 | 174 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2538 | 214..352 | 169 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6815 | 264..352 | 166 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6949 | 215..333 | 156 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6951 | 214..355 | 153 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6794 | 267..352 | 150 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..6923 | 208..286 | 138 | 69.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1155 | 213..308 | 138 | 66 | Plus |
| BS | 5142 | BS BS 5142bp | 1942..2075 | 202..334 | 126 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2734..2824 | 237..332 | 120 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2667 | 269..340 | 118 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 999..1130 | 225..352 | 118 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2820 | 276..352 | 117 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1576 | 271..332 | 113 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6773 | 316..352 | 113 | 78.4 | Plus |
BO23540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:08 Download gff for
BO23540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3556-RA | 390..2169 | 22..1803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:13 Download gff for
BO23540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3556-RA | 390..2169 | 22..1803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:47 Download gff for
BO23540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3556-RA | 390..2169 | 22..1803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:47 Download gff for
BO23540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4533261..4533343 | 1660..1742 | 100 | -> | Plus |
| X | 4533525..4533583 | 1743..1803 | 96 | | Plus |
| X | 4531315..4532678 | 22..1385 | 100 | -> | Plus |
| X | 4532856..4533051 | 1386..1581 | 100 | -> | Plus |
| X | 4533120..4533197 | 1582..1659 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:13 Download gff for
BO23540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4425348..4426711 | 22..1385 | 100 | -> | Plus |
| arm_X | 4426889..4427084 | 1386..1581 | 100 | -> | Plus |
| arm_X | 4427153..4427230 | 1582..1659 | 100 | -> | Plus |
| arm_X | 4427294..4427376 | 1660..1742 | 100 | -> | Plus |
| arm_X | 4427558..4427616 | 1743..1803 | 96 | | Plus |
BO23540.pep Sequence
Translation from 16 to 1819
> BO23540.pep
MLSLSSPPWLLLLVLFFFANGSATVVSLAENVTLATLPSTSPISVSFSTT
SSVVAPISTELENQTASSSNLNTNNEASDEQTGNSNSNTSSHSRNINGLP
SSNSNIDNANSNSSSVSSLSTTTSAISGVDQQESLILATPTALNGSGTPP
EHQTIGQAPPTKGEQEAILRALDWLKEKRASDYGWGNDTHVVILAKELSG
GRDPNDSVDGHVQVIQELEDTLSVKEMEIEILAMLDRHHTLPKPLDLDKL
ARYVLALGSLCKDPKHFHGHDLVATLQHHEPAQDIEFALTTLSACSSAAH
VRKRQIRRLLDIASGVTDQSVDAIAMVILALRCIVTDHRHRHLQHFVRRP
ARGLATLQDQRGSFGSLRSTALAMQALQDLEYDPAGHWNRTAASRYILSR
QRADGGWSEEPLQDGQEPDIGVGLTADIILALGWKGLGAVRALQCDHVIR
ESSDPTENGEPKLAVPFGLSSSAEESDAKNISYTYTLWVGSNVTESFSLS
LVSPKNTSFFKAMTQAAEMDPRFIFEAREWPNGHYVHTLYGKKEEPRGYH
YWLLYRLPELPDPNNTPGNQLIAPVGVDELMVEDGEHYLYWYKKLASFLD
H
BO23540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3556-PB | 595 | CG3556-PB | 1..595 | 1..595 | 3079 | 100 | Plus |
| CG3556-PA | 595 | CG3556-PA | 1..595 | 1..595 | 3079 | 100 | Plus |
