BO23541.complete Sequence
1198 bp assembled on 2010-04-13
GenBank Submission: KX794589
> BO23541.complete
GAAGTTATCAGTCGACATGGCCAGCACAGCGGTGGGACTGGGAGGCGGCG
AAGGTGACCCCGGGGCGGGAGGACCGCCAGCGGGATCAGCGCATCCCGAC
GACGCCAGCAGCATGAGCGACGACGTCTTCGAGGATGCGGAGACCACCCA
GGCCAGGATCGAGGAGCTGCGTCGCCGGCCCTTTGGCGATGGCTCCTACA
ATCCCCCCGCAGCGCCCGCCTCAGTTTCCGCCTCGATAACGACGACAACG
ACACAGCAGCAGCAACAACATCACAATCCTTCGCATCACCACCAATCCTC
GCACCACCAACCATCCCACCACCATCACCACCACCACCACAGCCAGCTGA
GTTTGACGGGCAGCCATCACTACCACGACGATGCTATCATGGCGCCCGTT
CAGCGCTCGGCCACCGGATATCCTGGCTATCGTCCCTCCCGCGAGGCAAT
GCAGATGTATGCGTACGGAACGGATGACTACGACGATGACTATAACGATG
GTTGGCGATCGTATCGCTACGATGAAGTGGACATGCACCCAGCCCCGTCC
AACGCCCATCAGCAGCCCTTCGATGATACGGTTAACCACAAGACGATCCT
GCTGGGGGATTCGGGCGTGGGAAAGACCTCCTTCCTGGTCAAATACAATA
CGGGCGAGTTCCGACTGGGTTCCTTTTCCGCCACAGTGGGCATTGCGCTT
ACGAACAAAGTGGTGGTCGTCGATGGAACGCGCGTCAAGCTGCAAATCTG
GGACACAGCTGGTCAGGAGCGATTCCGGAGCGTTACCCACGCCTATTATC
GCGACGCGCACGCTCTACTGCTGCTGTACGACGTGACCAACAAGACCACC
TATGACAACATTCGCGCCTGGCTGGGCGAGATCCGGGAGTACGCGCAGGA
GGACGTGGTCATCGTTTTAATAGGCAACAAGGCCGACTGCAGCGGCAGCG
AGCGGCAGGTGAAGCGGGAGGATGGGGAGCGTTTGGGGCGGGAGCACAAC
GTGCCCTTCATGGAGACCTCGGCCAAGACGGGACTCAATGTGGAGCTGTC
CTTCACAGCGGTGGCCAGGCAACTAAAGAGTCGCGGCTACGAGCACGGCG
ATGATGGAAAGTTCAATGTGCATGATTTTGTGCGTGACAATACAAAGGCG
CGCTCGGTTTGCGCCCAGTGCAGGAACATGGCAAGCTTTCTAGACCAT
BO23541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab26-RG | 1167 | CG34410-PG | 1..1164 | 17..1180 | 5820 | 100 | Plus |
| Rab26-RB | 1167 | CG34410-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
| Rab26-RE | 1233 | CG34410-PE | 732..1230 | 682..1180 | 2420 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab26-RG | 3355 | CG34410-RG | 1172..2335 | 17..1180 | 5820 | 100 | Plus |
| Rab26-RB | 2518 | CG34410-RB | 1172..2335 | 17..1180 | 5820 | 100 | Plus |
| Rab26-RE | 3311 | CG34410-RE | 1172..1860 | 17..705 | 3445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21319945..21320631 | 17..703 | 3435 | 100 | Plus |
| 3L | 28110227 | 3L | 21333348..21333495 | 922..1069 | 740 | 100 | Plus |
| 3L | 28110227 | 3L | 21333893..21334007 | 1066..1180 | 575 | 100 | Plus |
| 3L | 28110227 | 3L | 21333153..21333265 | 812..924 | 565 | 100 | Plus |
| 3L | 28110227 | 3L | 21332602..21332711 | 703..812 | 550 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2504 | 207..349 | 186 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2548 | 233..347 | 184 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6832 | 246..351 | 165 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2419..2534 | 238..349 | 164 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2443 | 207..348 | 161 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6901 | 207..345 | 159 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6927 | 207..339 | 159 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2451 | 246..373 | 156 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1162 | 254..349 | 156 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6850 | 243..349 | 150 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..6924 | 243..348 | 145 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6888 | 243..375 | 142 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6892 | 243..345 | 140 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1501..1601 | 245..341 | 135 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2466..2537 | 243..313 | 132 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1519..1577 | 238..295 | 130 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2467 | 253..339 | 129 | 60.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1163 | 246..335 | 119 | 60.4 | Plus |
BO23541.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:11 Download gff for
BO23541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RB | 1172..2335 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:52 Download gff for
BO23541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RB | 1172..2335 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:41 Download gff for
BO23541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab26-RB | 1172..2335 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:41 Download gff for
BO23541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21319945..21320631 | 17..703 | 100 | -> | Plus |
| 3L | 21332603..21332711 | 704..812 | 100 | -> | Plus |
| 3L | 21333154..21333264 | 813..923 | 100 | -> | Plus |
| 3L | 21333350..21333494 | 924..1068 | 100 | -> | Plus |
| 3L | 21333896..21334007 | 1069..1182 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:52 Download gff for
BO23541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21313045..21313731 | 17..703 | 100 | -> | Plus |
| arm_3L | 21325703..21325811 | 704..812 | 100 | -> | Plus |
| arm_3L | 21326254..21326364 | 813..923 | 100 | -> | Plus |
| arm_3L | 21326450..21326594 | 924..1068 | 100 | -> | Plus |
| arm_3L | 21326996..21327107 | 1069..1182 | 98 | | Plus |
BO23541.pep Sequence
Translation from 16 to 1198
> BO23541.pep
MASTAVGLGGGEGDPGAGGPPAGSAHPDDASSMSDDVFEDAETTQARIEE
LRRRPFGDGSYNPPAAPASVSASITTTTTQQQQQHHNPSHHHQSSHHQPS
HHHHHHHHSQLSLTGSHHYHDDAIMAPVQRSATGYPGYRPSREAMQMYAY
GTDDYDDDYNDGWRSYRYDEVDMHPAPSNAHQQPFDDTVNHKTILLGDSG
VGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWDTAGQ
ERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIV
LIGNKADCSGSERQVKREDGERLGREHNVPFMETSAKTGLNVELSFTAVA
RQLKSRGYEHGDDGKFNVHDFVRDNTKARSVCAQCRNMASFLDH
BO23541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab26-PG | 388 | CG34410-PG | 1..388 | 1..388 | 2090 | 100 | Plus |
| Rab26-PB | 388 | CG34410-PB | 1..388 | 1..388 | 2090 | 100 | Plus |
| Rab26-PE | 410 | CG34410-PE | 200..410 | 178..388 | 930 | 85.3 | Plus |
| Rab26-PD | 410 | CG34410-PD | 200..410 | 178..388 | 930 | 85.3 | Plus |
| Rab26-PC | 410 | CG34410-PC | 200..410 | 178..388 | 930 | 85.3 | Plus |
