BO23548.complete Sequence
1102 bp assembled on 2010-07-02
GenBank Submission: KX796598
> BO23548.complete
GAAGTTATCAGTCGACATGAAAGACGCAAAGCCCTTTCCCGTGCTCAAGA
ATGATAACCTGCTGCGCGCCGCACGTGGCGAGGTGGTGGACCGGGTGCCT
GTTTGGGTGATGCGCCAAGCGGGGCGCTACCTGCCGGAGTTCCAGGAGCT
GCGAAAGCACCACGACTTCTTCACCGTCTGCCGCACCCCGGAGCTAGCGT
GCGAAGTGACCATGCAGCCATTGCGCCGCTTCGACCTGGACGCCTCCATA
ATTTTTTCGGACATCCTTGTCATTCCCCAAGCACTCGGCCTCACCGTGGA
GATGCACGCGGGCGTTGGTCCCGTTCTGCCACAGCCCATCGTGGTGCCGG
AGGACCTCAAGCGCCTGACGCCGGACGGAGCCTTGTCCCGCCTCAGCTAC
GTGGGCGACGCAATCACCATGATGCGGCACAAGCTCGAAGGTCGAGTGCC
GCTAATCGGCTTTACAGGAGCGCCGTGGACACTAATGGGATATATGATCG
AGGGCGGTGGGAGCAAGACCATGTCGAAAGCTAAAGCTTGGCTCAACGAA
CATCCTGAGGACTCTAAGCTGTTCCTGAACCTGCTGACCGACGCAATTGT
GGACTACCTGGAGATGCAGGTGAAAGCTGGCGCTCAAATGCTGCAGGTAT
TCGAATCGTCCGCCGAGCATCTCTCCAAGGAGCAGTTCCTGCAGTGGTGT
GTACCCTACCTGAAGAGAATACGCGACGAGCTGGTGGACCGTCTCACAAA
GAAGGCCATCCCCGTGGTTCCCATGACGCTGTTCGCTAAGGGTGCTGGGC
ACTCGCTGAAGGAGCAGAGCGAACTGGGCTACGACGTTATTGGCTTGGAT
TGGACTGTGGATCCGCTGGAGGCACGCAATTTGGTCGGACCGAACATTAC
GTTGCAAGGCAACTTGGATCCTCAGGACATGTACCGCGATCCTGATGAGC
TGCGCAACCTGACCACAGAAATGGTGCACAAGTTCGGCAAGTCGCGCTAC
ATCGCCAATCTGGGACATGGAATCACGCCTCAGACTCCGATCACGAGCAT
GGAAGTGCTGGTGGAGGCGGTGCACAAGGCTCTGGCAAGCTTTCTAGACC
AT
BO23548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Updo-RA | 1071 | CG1818-PA | 1..1068 | 17..1084 | 5310 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Updo-RA | 1299 | CG1818-RA | 145..1212 | 17..1084 | 5310 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9584926..9585671 | 30..775 | 3700 | 99.7 | Plus |
| 2R | 25286936 | 2R | 9585730..9586039 | 775..1084 | 1550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:23:59 has no hits.
BO23548.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:34:50 Download gff for
BO23548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 121..1188 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:26 Download gff for
BO23548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 145..1212 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:27 Download gff for
BO23548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 145..1212 | 17..1086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:27 Download gff for
BO23548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9584928..9585671 | 32..775 | 99 | -> | Plus |
| 2R | 9585731..9586039 | 776..1086 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:26 Download gff for
BO23548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5473236..5473544 | 776..1086 | 99 | | Plus |
| arm_2R | 5472433..5473176 | 32..775 | 99 | -> | Plus |
BO23548.pep Sequence
Translation from 16 to 1102
> BO23548.pep
MKDAKPFPVLKNDNLLRAARGEVVDRVPVWVMRQAGRYLPEFQELRKHHD
FFTVCRTPELACEVTMQPLRRFDLDASIIFSDILVIPQALGLTVEMHAGV
GPVLPQPIVVPEDLKRLTPDGALSRLSYVGDAITMMRHKLEGRVPLIGFT
GAPWTLMGYMIEGGGSKTMSKAKAWLNEHPEDSKLFLNLLTDAIVDYLEM
QVKAGAQMLQVFESSAEHLSKEQFLQWCVPYLKRIRDELVDRLTKKAIPV
VPMTLFAKGAGHSLKEQSELGYDVIGLDWTVDPLEARNLVGPNITLQGNL
DPQDMYRDPDELRNLTTEMVHKFGKSRYIANLGHGITPQTPITSMEVLVE
AVHKALASFLDH
BO23548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Updo-PA | 356 | CG1818-PA | 1..356 | 1..356 | 1855 | 100 | Plus |
