Clone BO23550 Report

Search the DGRC for BO23550

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:235
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-SC1a-RA
Protein status:BO23550.pep: Inserted from web
Sequenced Size:589

Clone Sequence Records

BO23550.complete Sequence

589 bp assembled on 2010-04-13

GenBank Submission: KX797348

> BO23550.complete
GAAGTTATCAGTCGACATGGTTTCCAAAGTGGCTCTCCTCCTCGCCGTCC
TGGTCTGCAGCCAGTATATGGCCCAGGGCGTCTATGTCGTCTCCAAGGCG
GAGTGGGGTGGTCGCGGCGCCAAATGGACCGTAGGCCTGGGCAACTACCT
CAGCTACGCCATCATCCACCACACCGCCGGCTCCTACTGCGAGACCCGTG
CCCAGTGCAACGCCGTGCTGCAGAGCGTCCAGAACTACCACATGGACTCC
CTGGGCTGGCCCGACATCGGCTACAACTTCCTGATCGGCGGAGACGGCAA
CGTGTACGAGGGGCGTGGCTGGAACAACATGGGCGCCCACGCCGCCGAGT
GGAACCCCTACAGCATCGGCATCAGCTTCCTGGGCAACTACAACTGGGAC
ACCCTGGAGCCGAACATGATCTCCGCCGCCCAGCAGCTGCTCAACGACGC
CGTCAACCGTGGCCAGCTCAGCTCCGGCTACATCCTGTACGGTCATCGCC
AGGTCAGCGCCACCGAATGCCCCGGCACTCACATCTGGAACGAGATCCGC
GGCTGGTCCCACTGGTCTGGTGCAAGCTTTCTAGACCAT

BO23550.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SC1b-RB 558 CG8577-PB 1..555 17..571 2775 100 Plus
PGRP-SC1b-RA 558 CG8577-PA 1..555 17..571 2775 100 Plus
PGRP-SC1a-RA 558 CG14746-PA 1..554 17..570 2740 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SC1b-RB 1649 CG8577-RB 30..585 16..571 2780 100 Plus
PGRP-SC1b-RA 626 CG8577-RA 30..585 16..571 2780 100 Plus
PGRP-SC1a-RA 588 CG14746-RA 30..584 16..570 2745 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8713475..8714030 16..571 2780 100 Plus
2R 25286936 2R 8709762..8710316 16..570 2745 99.6 Plus
2R 25286936 2R 8717084..8717512 137..565 780 78.8 Plus
Blast to na_te.dros performed 2014-11-26 15:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2385..2536 262..411 107 54.2 Plus

BO23550.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:15 Download gff for BO23550.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SC1b-RA 33..587 17..573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:17 Download gff for BO23550.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SC1b-RA 31..585 17..573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:42 Download gff for BO23550.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SC1b-RA 31..585 17..573 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:42 Download gff for BO23550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8713476..8714030 17..573 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:17 Download gff for BO23550.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4600981..4601535 17..573 99   Plus

BO23550.pep Sequence

Translation from 16 to 589

> BO23550.pep
MVSKVALLLAVLVCSQYMAQGVYVVSKAEWGGRGAKWTVGLGNYLSYAII
HHTAGSYCETRAQCNAVLQSVQNYHMDSLGWPDIGYNFLIGGDGNVYEGR
GWNNMGAHAAEWNPYSIGISFLGNYNWDTLEPNMISAAQQLLNDAVNRGQ
LSSGYILYGHRQVSATECPGTHIWNEIRGWSHWSGASFLDH

BO23550.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SC1a-PA 185 CG14746-PA 1..185 1..185 1023 100 Plus
PGRP-SC1b-PB 185 CG8577-PB 1..185 1..185 1023 100 Plus
PGRP-SC1b-PA 185 CG8577-PA 1..185 1..185 1023 100 Plus
PGRP-SC2-PA 184 CG14745-PA 1..182 1..183 692 68.9 Plus
PGRP-LC-PE 329 CG4432-PE 165..326 24..184 408 47.5 Plus