BO23550.complete Sequence
589 bp assembled on 2010-04-13
GenBank Submission: KX797348
> BO23550.complete
GAAGTTATCAGTCGACATGGTTTCCAAAGTGGCTCTCCTCCTCGCCGTCC
TGGTCTGCAGCCAGTATATGGCCCAGGGCGTCTATGTCGTCTCCAAGGCG
GAGTGGGGTGGTCGCGGCGCCAAATGGACCGTAGGCCTGGGCAACTACCT
CAGCTACGCCATCATCCACCACACCGCCGGCTCCTACTGCGAGACCCGTG
CCCAGTGCAACGCCGTGCTGCAGAGCGTCCAGAACTACCACATGGACTCC
CTGGGCTGGCCCGACATCGGCTACAACTTCCTGATCGGCGGAGACGGCAA
CGTGTACGAGGGGCGTGGCTGGAACAACATGGGCGCCCACGCCGCCGAGT
GGAACCCCTACAGCATCGGCATCAGCTTCCTGGGCAACTACAACTGGGAC
ACCCTGGAGCCGAACATGATCTCCGCCGCCCAGCAGCTGCTCAACGACGC
CGTCAACCGTGGCCAGCTCAGCTCCGGCTACATCCTGTACGGTCATCGCC
AGGTCAGCGCCACCGAATGCCCCGGCACTCACATCTGGAACGAGATCCGC
GGCTGGTCCCACTGGTCTGGTGCAAGCTTTCTAGACCAT
BO23550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SC1b-RB | 558 | CG8577-PB | 1..555 | 17..571 | 2775 | 100 | Plus |
PGRP-SC1b-RA | 558 | CG8577-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
PGRP-SC1a-RA | 558 | CG14746-PA | 1..554 | 17..570 | 2740 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SC1b-RB | 1649 | CG8577-RB | 30..585 | 16..571 | 2780 | 100 | Plus |
PGRP-SC1b-RA | 626 | CG8577-RA | 30..585 | 16..571 | 2780 | 100 | Plus |
PGRP-SC1a-RA | 588 | CG14746-RA | 30..584 | 16..570 | 2745 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8713475..8714030 | 16..571 | 2780 | 100 | Plus |
2R | 25286936 | 2R | 8709762..8710316 | 16..570 | 2745 | 99.6 | Plus |
2R | 25286936 | 2R | 8717084..8717512 | 137..565 | 780 | 78.8 | Plus |
Blast to na_te.dros performed 2014-11-26 15:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2536 | 262..411 | 107 | 54.2 | Plus |
BO23550.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:15 Download gff for
BO23550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SC1b-RA | 33..587 | 17..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:17 Download gff for
BO23550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SC1b-RA | 31..585 | 17..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:42 Download gff for
BO23550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SC1b-RA | 31..585 | 17..573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:42 Download gff for
BO23550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8713476..8714030 | 17..573 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:17 Download gff for
BO23550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4600981..4601535 | 17..573 | 99 | | Plus |
BO23550.pep Sequence
Translation from 16 to 589
> BO23550.pep
MVSKVALLLAVLVCSQYMAQGVYVVSKAEWGGRGAKWTVGLGNYLSYAII
HHTAGSYCETRAQCNAVLQSVQNYHMDSLGWPDIGYNFLIGGDGNVYEGR
GWNNMGAHAAEWNPYSIGISFLGNYNWDTLEPNMISAAQQLLNDAVNRGQ
LSSGYILYGHRQVSATECPGTHIWNEIRGWSHWSGASFLDH
BO23550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SC1a-PA | 185 | CG14746-PA | 1..185 | 1..185 | 1023 | 100 | Plus |
PGRP-SC1b-PB | 185 | CG8577-PB | 1..185 | 1..185 | 1023 | 100 | Plus |
PGRP-SC1b-PA | 185 | CG8577-PA | 1..185 | 1..185 | 1023 | 100 | Plus |
PGRP-SC2-PA | 184 | CG14745-PA | 1..182 | 1..183 | 692 | 68.9 | Plus |
PGRP-LC-PE | 329 | CG4432-PE | 165..326 | 24..184 | 408 | 47.5 | Plus |