Clone BO23553 Report

Search the DGRC for BO23553

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:235
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG10635-RA
Protein status:BO23553.pep: Imported from assembly
Sequenced Size:448

Clone Sequence Records

BO23553.complete Sequence

448 bp assembled on 2010-04-13

GenBank Submission: KX795755

> BO23553.complete
GAAGTTATCAGTCGACATGGCAGCAAAAGTAGCGAGCGGCACGAACAAAG
TGTTCCAGAACCACGATGACGTGCACATCTCCTTCGAGGATCAGCAGCGG
ATCAACCGCTTTGCGAAGCACAACGCCCGCATGGATGACTTCAAAGCGGA
GCTGGAAACGAAGCGCAATGAGCTGAAGAGCTTGGAGGAGGCGCTGGAGG
AGATTGAGCTGTTCGACGAGGACGAGGACATACCGTTCCTGGTTGGCGAG
GTGTTCCTCTCGCACAAGCTGGAGAAAACACAGGACATGCTGAAGGAGAC
CAAGGAGCAGGTGCTCAAGGAGATCGCCGGCGTGGAAGCCAAGGCGAAGG
TTATCAAGGCGGAAATGGACGAGCTGAAGGCTCATCTGTATCAGCGATTC
GGCAGCAATATCTCACTAGAGGCCGAGGATGCAAGCTTTCTAGACCAT

BO23553.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10635-RA 417 CG10635-PA 1..414 17..430 2010 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10635-RA 543 CG10635-RA 65..478 17..430 2010 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5367406..5367774 430..62 1785 98.9 Minus
3L 28110227 3L 5367900..5367944 61..17 225 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:28:17 has no hits.

BO23553.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:21 Download gff for BO23553.complete
Subject Subject Range Query Range Percent Splice Strand
CG10635-RA 65..478 17..432 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:21 Download gff for BO23553.complete
Subject Subject Range Query Range Percent Splice Strand
CG10635-RA 65..478 17..432 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:45 Download gff for BO23553.complete
Subject Subject Range Query Range Percent Splice Strand
CG10635-RA 65..478 17..432 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:45 Download gff for BO23553.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5367404..5367774 62..432 98 <- Minus
3L 5367900..5367944 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:21 Download gff for BO23553.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5360504..5360874 62..432 98 <- Minus
arm_3L 5361000..5361044 17..61 100   Minus

BO23553.pep Sequence

Translation from 16 to 448

> BO23553.pep
MAAKVASGTNKVFQNHDDVHISFEDQQRINRFAKHNARMDDFKAELETKR
NELKSLEEALEEIELFDEDEDIPFLVGEVFLSHKLEKTQDMLKETKEQVL
KEIAGVEAKAKVIKAEMDELKAHLYQRFGSNISLEAEDASFLDH

BO23553.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10635-PA 138 CG10635-PA 1..138 1..138 691 100 Plus