BO23560.complete Sequence
1867 bp assembled on 2010-05-06
GenBank Submission: KX795823
> BO23560.complete
GAAGTTATCAGTCGACATGGCCAACCGTATGAGAGGAGGAGCCTGCTGTC
CTTCAAGATGTCAGCCCGCCTGTCCACCATGTCCGCCACCTGGTCCGCCC
TGCGATGCACCTCTGGTGCGACTGGATAAACTGTGGCCGGAGCCCTACAA
TCCTTGCTCCTTCAAGAATTGCCTGATCTTTGGCGGTCACGATGAGCCCT
ATATTCGACCCTTTGATCCTAAGGGTTGTACACGAATGCGTCGCAATGAT
ATCGACCGATCGTTGGGCTATCCCATAGGCGTAGTGTCTGGTACGACTGT
TGTAAAGTCGGGCATTCCGAATCAGGAGAGCGTCCGGTTTGCTTCAAATC
TTAAGGCATTTGCTCATTCCTATTACACGCGGCGCGATGAATGGAAACCG
GATACGATCGATATGGTGGTGAACGAGGGTCAGGTTTTGTTTAACGATTC
CGAGAACATGGACCCTCCGAATGCATCAGACTCGCCGGATATCTACGATG
AAAATGAGCAAAAGGTGACGCGCCACTTTAAGATCAACGATATCGAGTTT
GCCATGGAGTTGGAGGCGCCCTTTGAGGTCTATGGCTACGAAAACGTCAT
ACGCAATCTACGCAGAATCTTAAGAGCCTTCTTCAAAAAGGCCAAATACG
GTGTGTTCTTCACACCCAATTGGTATCTGCTGATTTGGAAAGAGAAGGGT
GTTTGGATGGTACTCGATTTGAATGGCAGGGACAAAAACACGATGAAACC
GAACAATGAAGAGGGGTATCCCCTATTGTTAGGCCTCAAGTCCTTCGATA
ATGTTGTTTGGTTGATTAAAAAGGAGAGCTATCTTGATAAGAACGCTAAG
TTTTCAATTAGAGAAATCCTCGTTGTTCGTTTGGCCACCCCTGGAAGTAC
TGGTCAAAGTTGGGAGCGAGAACATGGCATGCGAATGAGCCAGTTCGATG
TGATTGCCTCCGATTATGCGTATGTCAAGTCAAATCTTCATCTCACCCTA
AACTCGAAGGATGCGCTAAGGAATCGTAGTGCTCTACCTGTGGCCGTGGC
AACTGCATTGGCATCGAAGATCGATCATCCAGCCACTTGGGACCAGAAAA
TGTACGATAAGGTCATGTGCTATGGCGTTAATATGTGCAAAAATTGCTGG
GAACCCTGTATGGATCCCAGTAAACCGATGGATCTCGATGATTTTCCACG
ACAGATTCGCTTGGGTCAGTTTGTGGCCGAGATTATGCTAACTCCAAATG
CCTACGAGGGCTGGTGGAAGTGTGTGCCGATGTACAAGTTCAACGATTTC
CATCTTATGTTGGAGAAGGCTCTCGATCAAAACGATTATATAATCTTCCA
GATCAACAATCAGATGTATTCGCTGTGGAAGAAGTCGGATTTTATCTACC
TAATGGATCCGTATCGCCACAATATAGTGGGTCGCATTTTGGAGGAGGGC
GAGGATCCGAAAAGTGCCACGGTTCGCATGTTCGGTAATATGGATCGTCT
GTTGAGTGTTTTCCATCAGATCCTATTGGAATCGAATCGATCCGCTGTAT
TCCATATACATACGCTCCGGATTAGAAATATTACAGAATGTCCGCCGGGC
ACAGCTCCTGCCCTACTACCTCCGGATGAGGATGTGGAGGTAAGATCGCT
CAATGAGAATATCCGTTTCGATGAGAACTACGACAAGTGCTTGCAAGAGC
TGGGTGAGATCAGCGATTTCGAGGAGGATCTCGTCTCCGAGATCGAACCC
ATTGTGGAGATCAGTTCCTCGGAGGAGATGGTCGAGGAGGAGGAAGGTGG
TGGCGGTGGTGCTGTCGAAGGAGGCGAGGGAGAGGAAGACGATGAAGATG
CAAGCTTTCTAGACCAT
BO23560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4669-RA | 1836 | CG4669-PA | 1..1833 | 17..1849 | 9165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4669-RA | 2101 | CG4669-RA | 145..1977 | 17..1849 | 9165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5234770..5236507 | 112..1849 | 8690 | 100 | Plus |
| 3L | 28110227 | 3L | 5234627..5234721 | 17..111 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:36:25 has no hits.
BO23560.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-06 09:24:21 Download gff for
BO23560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4669-RA | 149..1981 | 17..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:17 Download gff for
BO23560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4669-RA | 145..1977 | 17..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:31 Download gff for
BO23560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4669-RA | 145..1977 | 17..1851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:31 Download gff for
BO23560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5234627..5234721 | 17..111 | 100 | -> | Plus |
| 3L | 5234770..5236507 | 112..1851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:17 Download gff for
BO23560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5227727..5227821 | 17..111 | 100 | -> | Plus |
| arm_3L | 5227870..5229607 | 112..1851 | 99 | | Plus |
BO23560.pep Sequence
Translation from 16 to 1867
> BO23560.pep
MANRMRGGACCPSRCQPACPPCPPPGPPCDAPLVRLDKLWPEPYNPCSFK
NCLIFGGHDEPYIRPFDPKGCTRMRRNDIDRSLGYPIGVVSGTTVVKSGI
PNQESVRFASNLKAFAHSYYTRRDEWKPDTIDMVVNEGQVLFNDSENMDP
PNASDSPDIYDENEQKVTRHFKINDIEFAMELEAPFEVYGYENVIRNLRR
ILRAFFKKAKYGVFFTPNWYLLIWKEKGVWMVLDLNGRDKNTMKPNNEEG
YPLLLGLKSFDNVVWLIKKESYLDKNAKFSIREILVVRLATPGSTGQSWE
REHGMRMSQFDVIASDYAYVKSNLHLTLNSKDALRNRSALPVAVATALAS
KIDHPATWDQKMYDKVMCYGVNMCKNCWEPCMDPSKPMDLDDFPRQIRLG
QFVAEIMLTPNAYEGWWKCVPMYKFNDFHLMLEKALDQNDYIIFQINNQM
YSLWKKSDFIYLMDPYRHNIVGRILEEGEDPKSATVRMFGNMDRLLSVFH
QILLESNRSAVFHIHTLRIRNITECPPGTAPALLPPDEDVEVRSLNENIR
FDENYDKCLQELGEISDFEEDLVSEIEPIVEISSSEEMVEEEEGGGGGAV
EGGEGEEDDEDASFLDH
BO23560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4669-PA | 611 | CG4669-PA | 1..611 | 1..611 | 3317 | 100 | Plus |
| ms(3)76Cc-PA | 1174 | CG9392-PA | 58..608 | 69..595 | 1038 | 41.2 | Plus |
| CG32436-PA | 1737 | CG32436-PA | 323..725 | 114..518 | 232 | 22.6 | Plus |
