BO23562.complete Sequence
1600 bp assembled on 2010-05-06
GenBank Submission: KX795288
> BO23562.complete
GAAGTTATCAGTCGACATGAAAACTCTTTTGGTTCTTCGGATATCAACTG
TCATACTTGTTGTGCTGGTTATTCAAAAATCATATGCAGACATTCTCGAA
TGCGATTATTTCGACACTGTCGATATTTCGGCAGCTCAAAAACTACAGAA
TGGATCGTACTTATTTGAGGGGTTGCTCGTTCCGGCCATTTTGACGGGAG
AATATGACTTTAGGATTCTCCCGGACGACTCGAAGCAGAAGGTGGCTCGT
CACATAAGAGGATGTGTGTGCAAGCTGAAGCCCTGTGTCAGATTTTGCTG
CCCTCACGACCATATCATGGATAATGGTGTCTGCTACGACAACATGTCCG
ACGAGGAGCTGGCTGAACTCGATCCCTTCCTTAATGTGACTCTTGACGAC
GGGTCGGTGTCCCGCAGACACTTTAAAAACGAACTAATCGTCCAGTGGGA
CCTACCGATGCCGTGTGACGGAATGTTCTACCTAGACAACCGCGAAGAAC
AGGATAAGTACACGTTGTTCGAGAACGGAACTTTCTTTCGCCACTTTGAC
CGTGTGACTCTTCGCAAGCGGGAATACTGCCTTCAGCATCTTACATTCGC
AGATGGTAATGCTACGTCTATTCGAATTGCACCTCACAACTGTTTGATAG
TGCCATCAATTACCGGTCAGACGGTTGTGATGATCTCTTCGCTGATATGC
ATGGTTCTAACGATCGCCGTATACCTCTTCGTCAAGAAACTACAAAACTT
GCATGGAAAATGCTTCATCTGCTACATGGTGTGTCTCTTTATGGGATATC
TTTTCCTATTGCTCGATTTGTGGCAGATATCCATTAGCTTTTGCAAACCA
GCAGGTTTTCTGGGTTACTTCTTTGTCATGGCCGCATTTTTTTGGCTTTC
CGTCATCAGTCTGCACCTTTGGAACACGTTCAGAGGCTCCTCCCACAAAG
CGAATCGCTTCTTATTTGAGCATCGGTTTCTGGCCTACAATACCTATGCT
TGGGGCATGGCGGTGGTCCTGACAGGAATTACCGTTCTGGCCGATAACAT
CGTGGAAAACCAGGATTGGAATCCTCGTGTGGGCCACGAGGGACACTGTT
GGATATATACTCAAGCCTGGTCAGCCATGCTCTACTTTTACGGTCCAATG
GTATTTCTTATTGCCTTTAACATAACCATGTTCATCCTGACGGCTAAGCG
TATATTAGGAGTGAAGAAGGACATTCAGAACTTTGCGCACAGGCAAGAGA
GAAAGCAGAAGCTGAACTCCGACAAACAGACTTACACCTTCTTCCTACGG
CTCTTCATCATTATGGGATTGTCCTGGAGCTTGGAGATAGGCTCCTACTT
TTCGCAATCCAACCAAACTTGGGCCAACGTCTTTCTGGTGGCTGACTATT
TAAATTGGTCTCAAGGAATCATCATATTTATACTGTTCGTTCTGAAGCGC
AGCACGTGGAGACTCTTGCAGGAGAGGAACCATCCTAAATCCACGAGGAG
TGTCATTTCTAACAGATCTATGGCAAGTCGTATTACCGTGGGAACAACTC
CTAAAAATAAAGCACGGAACTCGCCATTGGCTGCAAGCTTTCTAGACCAT
BO23562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mth-RB | 1569 | CG6936-PB | 1..1566 | 17..1582 | 7830 | 100 | Plus |
| mth-RE | 1545 | CG6936-PE | 1..1460 | 17..1476 | 7300 | 100 | Plus |
| mth-RA | 1545 | CG6936-PA | 1..1460 | 17..1476 | 7300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mth-RB | 1882 | CG6936-RB | 148..1713 | 17..1582 | 7830 | 100 | Plus |
| mth-RE | 2420 | CG6936-RE | 601..2060 | 17..1476 | 7300 | 100 | Plus |
| mth-RA | 1967 | CG6936-RA | 148..1607 | 17..1476 | 7300 | 100 | Plus |
| mth-RE | 2420 | CG6936-RE | 2144..2251 | 1475..1582 | 540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 345375..345881 | 523..17 | 2535 | 100 | Minus |
| 3L | 28110227 | 3L | 344615..344871 | 1109..853 | 1285 | 100 | Minus |
| 3L | 28110227 | 3L | 344106..344301 | 1477..1282 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 344920..345100 | 857..677 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 344367..344538 | 1281..1110 | 860 | 100 | Minus |
| 3L | 28110227 | 3L | 345158..345317 | 677..518 | 785 | 99.4 | Minus |
| 3L | 28110227 | 3L | 343547..343654 | 1582..1475 | 540 | 100 | Minus |
| 3L | 28110227 | 3L | 5605116..5605406 | 233..523 | 330 | 74.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:36:52 has no hits.
BO23562.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-06 09:24:24 Download gff for
BO23562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mth-RB | 100..1665 | 17..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:28 Download gff for
BO23562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mth-RB | 148..1713 | 17..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:41 Download gff for
BO23562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mth-RB | 148..1713 | 17..1584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:41 Download gff for
BO23562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 343545..343652 | 1477..1584 | 98 | <- | Minus |
| 3L | 344107..344301 | 1282..1476 | 100 | <- | Minus |
| 3L | 344367..344538 | 1110..1281 | 100 | <- | Minus |
| 3L | 344615..344869 | 855..1109 | 100 | <- | Minus |
| 3L | 344923..345099 | 678..854 | 100 | <- | Minus |
| 3L | 345158..345311 | 524..677 | 100 | <- | Minus |
| 3L | 345375..345881 | 17..523 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:28 Download gff for
BO23562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 343545..343652 | 1477..1584 | 98 | <- | Minus |
| arm_3L | 344107..344301 | 1282..1476 | 100 | <- | Minus |
| arm_3L | 344367..344538 | 1110..1281 | 100 | <- | Minus |
| arm_3L | 344615..344869 | 855..1109 | 100 | <- | Minus |
| arm_3L | 344923..345099 | 678..854 | 100 | <- | Minus |
| arm_3L | 345158..345311 | 524..677 | 100 | <- | Minus |
| arm_3L | 345375..345881 | 17..523 | 100 | | Minus |
BO23562.pep Sequence
Translation from 16 to 1600
> BO23562.pep
MKTLLVLRISTVILVVLVIQKSYADILECDYFDTVDISAAQKLQNGSYLF
EGLLVPAILTGEYDFRILPDDSKQKVARHIRGCVCKLKPCVRFCCPHDHI
MDNGVCYDNMSDEELAELDPFLNVTLDDGSVSRRHFKNELIVQWDLPMPC
DGMFYLDNREEQDKYTLFENGTFFRHFDRVTLRKREYCLQHLTFADGNAT
SIRIAPHNCLIVPSITGQTVVMISSLICMVLTIAVYLFVKKLQNLHGKCF
ICYMVCLFMGYLFLLLDLWQISISFCKPAGFLGYFFVMAAFFWLSVISLH
LWNTFRGSSHKANRFLFEHRFLAYNTYAWGMAVVLTGITVLADNIVENQD
WNPRVGHEGHCWIYTQAWSAMLYFYGPMVFLIAFNITMFILTAKRILGVK
KDIQNFAHRQERKQKLNSDKQTYTFFLRLFIIMGLSWSLEIGSYFSQSNQ
TWANVFLVADYLNWSQGIIIFILFVLKRSTWRLLQERNHPKSTRSVISNR
SMASRITVGTTPKNKARNSPLAASFLDH
BO23562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mth-PB | 522 | CG6936-PB | 1..522 | 1..522 | 2781 | 100 | Plus |
| mth-PE | 514 | CG6936-PE | 1..486 | 1..486 | 2601 | 100 | Plus |
| mth-PA | 514 | CG6936-PA | 1..486 | 1..486 | 2601 | 100 | Plus |
| mthl2-PB | 518 | CG17795-PB | 7..513 | 5..505 | 1733 | 62.2 | Plus |
| mthl3-PC | 511 | CG6530-PC | 7..484 | 10..487 | 1541 | 59.7 | Plus |
