Clone BO23574 Report

Search the DGRC for BO23574

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:235
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptmembrin-RA
Protein status:BO23574.pep: Imported from assembly
Sequenced Size:682

Clone Sequence Records

BO23574.complete Sequence

682 bp assembled on 2010-04-13

GenBank Submission: KX798106

> BO23574.complete
GAAGTTATCAGTCGACATGGAGAGCCTGTACCACCAAACCAACAATGTGG
TAAAGGACATCGAGCGCGATTTCCAGCGACTGAGTCAGCTCAGTGCCCAG
GAATCGCTTGACGTGGAAAACGGCATTCAATTGAAGATTACCCAGGCGAA
CGCCAACTGCGATCGGTTGGATGTGCTGCTGTATAAGGTGCCACCTTCGC
AGCGACAAAGCTCCAAACTTCGTGTGGATCAGCTGAAATATGACCTGAGA
CACCTGCAGACATCACTGCAGACGGCGCGGGAACGAAGACAGCGACGAAT
GCAGGAGATCTCCGAGAGGGAACAGCTGCTGAATCACAGATTCACGGCAA
ACAGCGCGCAGCCGGAGGAAACGCGCCTGCAATTGGACTACGAACTGCAG
CATCATACGCAGCTGGGTAACGCCCATCGGGGTGTGGATGACATGATTGC
CTCGGGCAGCGGCATTCTCGAGAGCCTGATCTCGCAGAGAATGACGCTGG
GCGGAGCGCACAAGAGAATCCAGGCGATAGGCAGCACACTGGGTCTGTCC
AATCACACGATGAAACTTATTGAACGCCGGCTGGTCGAAGATCGTCGGAT
ATTCATCGGAGGAGTGGTGGTCACCTTGCTTATCATCGCCCTGATCATCT
ATTTCCTAGTGCTCGCAAGCTTTCTAGACCAT

BO23574.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
Membrin-RA 651 CG4780-PA 1..648 17..664 3150 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Membrin-RA 858 CG4780-RA 141..792 13..664 3170 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5366806..5367315 155..664 2490 99.2 Plus
3L 28110227 3L 5366595..5366735 13..153 690 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 10:22:15 has no hits.

BO23574.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:47 Download gff for BO23574.complete
Subject Subject Range Query Range Percent Splice Strand
CG4780-RA 115..762 17..666 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:59 Download gff for BO23574.complete
Subject Subject Range Query Range Percent Splice Strand
membrin-RA 145..792 17..666 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:02 Download gff for BO23574.complete
Subject Subject Range Query Range Percent Splice Strand
Membrin-RA 145..792 17..666 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:02 Download gff for BO23574.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5366599..5366735 17..153 99 -> Plus
3L 5366805..5367315 154..666 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:59 Download gff for BO23574.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5359699..5359835 17..153 99 -> Plus
arm_3L 5359905..5360415 154..666 98   Plus

BO23574.pep Sequence

Translation from 16 to 682

> BO23574.pep
MESLYHQTNNVVKDIERDFQRLSQLSAQESLDVENGIQLKITQANANCDR
LDVLLYKVPPSQRQSSKLRVDQLKYDLRHLQTSLQTARERRQRRMQEISE
REQLLNHRFTANSAQPEETRLQLDYELQHHTQLGNAHRGVDDMIASGSGI
LESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGGV
VVTLLIIALIIYFLVLASFLDH

BO23574.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Membrin-PA 216 CG4780-PA 1..216 1..216 1073 100 Plus