Clone BO23580 Report

Search the DGRC for BO23580

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:235
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG1791-RB
Protein status:BO23580.pep: Imported from assembly
Sequenced Size:619

Clone Sequence Records

BO23580.complete Sequence

619 bp assembled on 2011-06-29

GenBank Submission: KX796270

> BO23580.complete
GAAGTTATCAGTCGACATGGAACCCTTCTTCGCGAGCTGTGACCAGAAAG
TGAGAGATGGTGGCTGGATGGTGATCGCCTATAGATTCGATGGCAGCGAG
GACTTCAACAAGGATTGGCAGAACTATAAGGCCGGTTTTGGCGCTTTAAA
CTCGGAGTTCTTTATCGGATTGGATAAGCTGCACAGGTTGACCAACAGTG
AGCACCACGAGTTGCTCATCATAATGAAGAAGAAAAGTGGAGAGGAACGT
TTCGCGCTGTACGATCACTTCAGTATTGGCAGTGAATCGGAAAAGTATCT
TCTATATGTACTTGGTGCCTACAAAGGTGATGCTGGTGATTCGCTACGTT
ACCATGCGGGCAAGAAGTTCACCACATTCGATCAGGATAACGACGATAAT
GGCCAAAACTGCGCCAGGACGCATGCAGGTGCCTGGTGGTATGGAAGGGA
GTGCTTCGAGAGCAACTTGTTTGGTACATTCCAGTCGAAGTACGGACAGG
AGATTGGCTATTTCAAGGGCATCCTGTGGAAATCCTTCCTGCCAGGACCC
ACTGGCTCGCTTAGCTATGTCCGCATGCTCATCCGGCCGCTCAAGAAACA
GGCAAGCTTTCTAGACCAT

BO23580.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1791-RC 1002 CG1791-PC 415..999 17..601 2925 100 Plus
CG1791-RB 588 CG1791-PB 1..585 17..601 2925 100 Plus
CG1791-RA 1005 CG1791-PA 418..1002 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1791-RC 1176 CG1791-RC 519..1103 17..601 2925 100 Plus
CG1791-RB 1193 CG1791-RB 536..1120 17..601 2925 100 Plus
CG1791-RA 1179 CG1791-RA 522..1106 17..601 2925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9963725..9964170 462..17 2230 100 Minus
X 23542271 X 9963526..9963666 601..461 705 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:35:02 has no hits.

BO23580.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:44 Download gff for BO23580.complete
Subject Subject Range Query Range Percent Splice Strand
CG1791-RB 536..1120 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:17 Download gff for BO23580.complete
Subject Subject Range Query Range Percent Splice Strand
CG1791-RB 536..1120 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:35 Download gff for BO23580.complete
Subject Subject Range Query Range Percent Splice Strand
CG1791-RA 522..1106 17..603 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:33 Download gff for BO23580.complete
Subject Subject Range Query Range Percent Splice Strand
CG1791-RA 522..1106 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:33 Download gff for BO23580.complete
Subject Subject Range Query Range Percent Splice Strand
X 9963524..9963664 463..603 98 <- Minus
X 9963725..9964170 17..462 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:35 Download gff for BO23580.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9857557..9857697 463..603 98 <- Minus
arm_X 9857758..9858203 17..462 100   Minus

BO23580.pep Sequence

Translation from 16 to 619

> BO23580.pep
MEPFFASCDQKVRDGGWMVIAYRFDGSEDFNKDWQNYKAGFGALNSEFFI
GLDKLHRLTNSEHHELLIIMKKKSGEERFALYDHFSIGSESEKYLLYVLG
AYKGDAGDSLRYHAGKKFTTFDQDNDDNGQNCARTHAGAWWYGRECFESN
LFGTFQSKYGQEIGYFKGILWKSFLPGPTGSLSYVRMLIRPLKKQASFLD
H

BO23580.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1791-PB 195 CG1791-PB 1..195 1..195 1069 100 Plus
CG1791-PC 333 CG1791-PC 139..333 1..195 1069 100 Plus
CG1791-PA 334 CG1791-PA 140..334 1..195 1069 100 Plus
CG1889-PC 332 CG1889-PC 138..328 1..191 631 58.6 Plus
CG1889-PA 332 CG1889-PA 138..328 1..191 631 58.6 Plus