Clone BO23588 Report

Search the DGRC for BO23588

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:235
Well:88
Vector:pDNR-Dual
Associated Gene/Transcriptnpf-RA
Protein status:BO23588.pep: Imported from assembly
Sequenced Size:340

Clone Sequence Records

BO23588.complete Sequence

340 bp assembled on 2010-04-13

GenBank Submission: KX796309

> BO23588.complete
GAAGTTATCAGTCGACATGTGCCAAACAATGCGTTGCATCCTGGTTGCCT
GTGTGGCCCTTGCCCTCCTAGCCGCCGGCTGCCGAGTGGAGGCGTCCAAC
TCCAGACCTCCGCGAAAGAACGATGTCAACACTATGGCTGATGCCTACAA
GTTCCTGCAGGATCTGGACACCTACTACGGCGACAGAGCCCGCGTTCGGT
TCGGAAAGCGCGGATCGCTGATGGATATCCTGAGGAATCACGAGATGGAC
AACATAAATCTAGGAAAAAATGCCAACAATGGAGGAGAATTTGCTCGCGG
TTTTAATGAGGAGGAGATATTCGCAAGCTTTCTAGACCAT

BO23588.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
NPF-RC 309 CG10342-PC 1..306 17..322 1530 100 Plus
NPF-RB 309 CG10342-PB 1..306 17..322 1530 100 Plus
NPF-RA 309 CG10342-PA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
NPF-RC 579 CG10342-RC 86..391 17..322 1530 100 Plus
NPF-RB 518 CG10342-RB 25..330 17..322 1530 100 Plus
NPF-RA 569 CG10342-RA 76..381 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16610779..16611055 17..293 1385 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:29:49 has no hits.

BO23588.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:28 Download gff for BO23588.complete
Subject Subject Range Query Range Percent Splice Strand
npf-RA 75..380 17..324 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:48 Download gff for BO23588.complete
Subject Subject Range Query Range Percent Splice Strand
npf-RA 76..381 17..324 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:16 Download gff for BO23588.complete
Subject Subject Range Query Range Percent Splice Strand
NPF-RA 76..381 17..324 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:16 Download gff for BO23588.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16610779..16611054 17..292 100 -> Plus
3R 16611108..16611137 293..324 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:48 Download gff for BO23588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12436501..12436776 17..292 100 -> Plus
arm_3R 12436830..12436859 293..324 93   Plus

BO23588.pep Sequence

Translation from 16 to 340

> BO23588.pep
MCQTMRCILVACVALALLAAGCRVEASNSRPPRKNDVNTMADAYKFLQDL
DTYYGDRARVRFGKRGSLMDILRNHEMDNINLGKNANNGGEFARGFNEEE
IFASFLDH

BO23588.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
NPF-PC 102 CG10342-PC 1..102 1..102 537 100 Plus
NPF-PB 102 CG10342-PB 1..102 1..102 537 100 Plus
NPF-PA 102 CG10342-PA 1..102 1..102 537 100 Plus