BO23589.complete Sequence
1951 bp assembled on 2010-05-06
GenBank Submission: KX795805
> BO23589.complete
GAAGTTATCAGTCGACATGCACGTGGCCAGCATTGAGAAGCTTCCCTTGA
GCACGACAGGATCTCCGCTACTCATCCGCTGCAAGACCTTCCTCTCCGTA
ACTTTCGTCATTCCCAAGGACTCCGAGTGCCACGATGTCTACACTTCGCT
GCTGAAACTCTTCCAGCCGGTGTCCATCAACAAATTGTACTGCTTCAACT
ACCAGCCGAACAAGGATGATTTCCCCAAGAACGCTGGCTGGGATTACTTT
AAACTGGAGGCGGAGTTCAAGCACATGCTGGTGCCCAACGAGGCCTGGAC
GCTGTGCTCCATGAACGAGAAGTACGAGCTGTGCGACACCTATCCGCGTC
AGATTTACGTGCCCAAGGAGGCCACCACGCTGATGCTCATCAGCAGCTCG
CGATTCCGCTCCAAGGGGCGGCTGCCAGTGCTCACCTATCTGCACAACAA
CAAGGCTTCCATCTGCCGCTGCAGTCAGCCCCTGTCCGGATTCAGTGCCC
GCTGTCTGGAGGATGAGCAGATGCTGGAGGCCATACGCAAGACGAATTCC
AACACGGACTACATGTATGTGGTGGACACGCGACCGCGGATTAATGCCAT
GGCAAACAGAGCCGCCGGCAAGGGATACGAGAACGAGGCCTTCTACGAGA
ACATCAAATTCCACTTCCTCGGCATTGAGAACATCCACGTCCAGCGTGCC
AGTCTGCAAAAGGTGCTTGAGGCCTGCGAACAGAAGTCGCCCACGATGAG
CGCCTTCATAAATGCCCTGGAGTCATCCGGCTGGCTGAAGCACATTCGCT
CCATATTGGACACGTCGAGCTTCATCGCCAACGCCGTGGACAAGGGCGTC
TCGGTGGTGGTCCACTGCTCCGACGGCTGGGACCGCACGGCCCAGGTCTG
TTCACTGGCGCAGCTGATGCTGAACCCCTACTACCGAACCATCAAGGGCT
TCCAGGCGCTAATCGAGAAGGACTGGCTGGCATTCGGGCACAAGTTCAGC
GAGCGCTGCGGTCACATCCAGACGGATGCCCGCGAGGTGTCGCCGATCTT
CACACAGTTCCTGGACTGTACCTGGCAGCTAATGTCGCAGCGCAGCGAGG
CCTTCGAGTTCAACGAGCGGTTCCTGCTCATCCTGCACGACCATGTGCAC
TCATGTCAATTCGGCACCTTCGTGGGCAACTGCGAGAAGGATCGCTTGGA
CCTAAAGCTGGCCGAGCGCACCTTCTCGCTGTGGGGCTATATGGCCAATC
ACCTGAACGAGTATATCAACCCGCTGTACAAACCAAATGTAGACGAGGCC
ATTAAGGCCAACCTGGCACCGCAGTGCATCAAGTTCTGGCGCGGCATGTA
CAGTCGCTTCGAGAGCGGCATTCATCCGCGGGAGCCACTGGGCGACGTGC
TGCTCGATAGCAAGGAGCACTGCAACTCGCTGGAGGACCACGTGCAGCAT
CTGACCAAGCGCATAGCCAGCTTCAAGAACTACATTTCCAAGTCGGCCAA
GAAACTGCAAGACGCCACCAGCGCCCCTGGCAAAGTGAACAAGGAGCTCT
CCAGCAACGAGATCAATGACAACAAATACAACTACGATAAGAAGCTTAGC
GAACTGTCTGCCGCCGACGACGATCATCCGCTGAAGGCCAGCAACATGTC
CTTCGCCAGTCTGTCGCTGAGCGCGGAACAATCCAGTCCGCCGCAGGCGC
TGCCCGAGGAGATCAACTCCGTGGCCGTAGACTGGAAGCCCATGCGCAAC
GTAACCACCTGCTCCTGCTCCACGCCCTTCGATCAGTTCAGCAAAAAGAC
TCACTGCTGGCGCTGCGGGGACATCTTCTGCGAGCGCTGCATAGACAAGA
ACGTGGCTCTGCCAGGACACGACAGTGGAAAGCCGGTGCCGGTGTGCCGG
GGCTGCTTCCGGCAAATGCAAAAGCAAAGCCCGGCAAGCTTTCTAGACCA
T
BO23589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-RA | 2286 | CG3530-PA | 365..2283 | 15..1933 | 9595 | 100 | Plus |
| CG3530-RB | 2070 | CG3530-PB | 149..2067 | 15..1933 | 9595 | 100 | Plus |
| CG3530-RC | 1920 | CG3530-PC | 1..1917 | 17..1933 | 9585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-RC | 3193 | CG3530-RC | 760..2678 | 15..1933 | 9595 | 100 | Plus |
| CG3530-RA | 3063 | CG3530-RA | 630..2548 | 15..1933 | 9595 | 100 | Plus |
| CG3530-RB | 2810 | CG3530-RB | 377..2295 | 15..1933 | 9595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23390303..23390819 | 1334..818 | 2585 | 100 | Minus |
| 2R | 25286936 | 2R | 23391389..23391674 | 455..170 | 1430 | 100 | Minus |
| 2R | 25286936 | 2R | 23390006..23390248 | 1575..1333 | 1215 | 100 | Minus |
| 2R | 25286936 | 2R | 23390895..23391125 | 819..589 | 1155 | 100 | Minus |
| 2R | 25286936 | 2R | 23389719..23389941 | 1798..1576 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 23391741..23391896 | 170..15 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 23389524..23389660 | 1933..1797 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 23391192..23391328 | 589..453 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:37:25 has no hits.
BO23589.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-06 09:24:26 Download gff for
BO23589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RC | 744..2660 | 17..1935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:41 Download gff for
BO23589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 379..2295 | 17..1935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:54 Download gff for
BO23589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 379..2295 | 17..1935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:54 Download gff for
BO23589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23391390..23391673 | 171..454 | 100 | <- | Minus |
| 2R | 23391741..23391894 | 17..170 | 100 | | Minus |
| 2R | 23389522..23389658 | 1799..1935 | 98 | <- | Minus |
| 2R | 23389719..23389941 | 1576..1798 | 100 | <- | Minus |
| 2R | 23390006..23390248 | 1333..1575 | 100 | <- | Minus |
| 2R | 23390305..23390817 | 820..1332 | 100 | <- | Minus |
| 2R | 23390895..23391124 | 590..819 | 100 | <- | Minus |
| 2R | 23391192..23391326 | 455..589 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:41 Download gff for
BO23589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19277045..19277181 | 1799..1935 | 98 | <- | Minus |
| arm_2R | 19277242..19277464 | 1576..1798 | 100 | <- | Minus |
| arm_2R | 19277529..19277771 | 1333..1575 | 100 | <- | Minus |
| arm_2R | 19277828..19278340 | 820..1332 | 100 | <- | Minus |
| arm_2R | 19278418..19278647 | 590..819 | 100 | <- | Minus |
| arm_2R | 19278715..19278849 | 455..589 | 100 | <- | Minus |
| arm_2R | 19278913..19279196 | 171..454 | 100 | <- | Minus |
| arm_2R | 19279264..19279417 | 17..170 | 100 | | Minus |
BO23589.pep Sequence
Translation from 16 to 1951
> BO23589.pep
MHVASIEKLPLSTTGSPLLIRCKTFLSVTFVIPKDSECHDVYTSLLKLFQ
PVSINKLYCFNYQPNKDDFPKNAGWDYFKLEAEFKHMLVPNEAWTLCSMN
EKYELCDTYPRQIYVPKEATTLMLISSSRFRSKGRLPVLTYLHNNKASIC
RCSQPLSGFSARCLEDEQMLEAIRKTNSNTDYMYVVDTRPRINAMANRAA
GKGYENEAFYENIKFHFLGIENIHVQRASLQKVLEACEQKSPTMSAFINA
LESSGWLKHIRSILDTSSFIANAVDKGVSVVVHCSDGWDRTAQVCSLAQL
MLNPYYRTIKGFQALIEKDWLAFGHKFSERCGHIQTDAREVSPIFTQFLD
CTWQLMSQRSEAFEFNERFLLILHDHVHSCQFGTFVGNCEKDRLDLKLAE
RTFSLWGYMANHLNEYINPLYKPNVDEAIKANLAPQCIKFWRGMYSRFES
GIHPREPLGDVLLDSKEHCNSLEDHVQHLTKRIASFKNYISKSAKKLQDA
TSAPGKVNKELSSNEINDNKYNYDKKLSELSAADDDHPLKASNMSFASLS
LSAEQSSPPQALPEEINSVAVDWKPMRNVTTCSCSTPFDQFSKKTHCWRC
GDIFCERCIDKNVALPGHDSGKPVPVCRGCFRQMQKQSPASFLDH
BO23589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-PC | 639 | CG3530-PC | 1..639 | 1..639 | 3428 | 100 | Plus |
| CG3530-PA | 761 | CG3530-PA | 123..761 | 1..639 | 3428 | 100 | Plus |
| CG3530-PB | 689 | CG3530-PB | 51..689 | 1..639 | 3428 | 100 | Plus |
| mtm-PB | 619 | CG9115-PB | 106..570 | 3..452 | 857 | 40.3 | Plus |
| mtm-PA | 619 | CG9115-PA | 106..570 | 3..452 | 857 | 40.3 | Plus |
