Clone BO23639 Report

Search the DGRC for BO23639

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:236
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG6891-RA
Protein status:BO23639.pep: Imported from assembly
Sequenced Size:523

Clone Sequence Records

BO23639.complete Sequence

523 bp assembled on 2010-04-13

GenBank Submission: KX798566

> BO23639.complete
GAAGTTATCAGTCGACATGTCGGACGGCATCGAGGTCGAGCAATTGGTGG
AGAGCAAGCCGAGAAGGATGCCGCTGGCCACGTCGCTGGAGAAGGACTCG
ATTCGCGAGGCCTACGAGGATGTACGCTCCGATCTGACAGACACCGAGTG
GGCGGTATTCAAGTTCGATGGCGCCCAGATTATTGTACATGCGCGCGGTC
AGTGCTTTGAGGAATTCCGACAGCAGTTCGGCGACTCGGAGCGCGCCTTT
GGCTACATACGCATCCAGATGGGTGACGAGATGTCCAAGCGCAAAAAGTT
CATCTTCCTGACGTGGATCGGGCAGGAGGTGGGCGTCATCCAGAGGGCCA
AGATGTCCACGGACAAGGCGCTGATCAAGGATGTCCTCAACAATTTTGCC
GTGGAACTTCAGGCGGGAGTGGAGGCCGAGCTGGACATTGAGCTCTTCCG
TGAAGCACTGAACCGTGCCGGCGGCGCCAACTACGGAACGGGCATCCGGG
ATAACGCAAGCTTTCTAGACCAT

BO23639.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6891-RA 492 CG6891-PA 1..489 17..505 2445 100 Plus
CG6891-RC 441 CG6891-PC 1..438 68..505 2190 100 Plus
CG6891-RB 441 CG6891-PB 1..438 68..505 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6891-RA 994 CG6891-RA 351..840 16..505 2450 100 Plus
CG6891-RB 805 CG6891-RB 210..651 64..505 2210 100 Plus
CG6891-RC 950 CG6891-RC 359..796 68..505 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18780680..18781004 67..391 1625 100 Plus
X 23542271 X 18785786..18785927 250..391 650 97.2 Plus
X 23542271 X 18781078..18781191 392..505 570 100 Plus
X 23542271 X 18786001..18786073 392..464 365 100 Plus
X 23542271 X 18775578..18775629 16..67 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:33:47 has no hits.

BO23639.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:10 Download gff for BO23639.complete
Subject Subject Range Query Range Percent Splice Strand
CG6891-RA 350..838 17..507 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:06 Download gff for BO23639.complete
Subject Subject Range Query Range Percent Splice Strand
CG6891-RA 352..840 17..507 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:05 Download gff for BO23639.complete
Subject Subject Range Query Range Percent Splice Strand
CG6891-RA 352..840 17..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:05 Download gff for BO23639.complete
Subject Subject Range Query Range Percent Splice Strand
X 18780681..18781004 68..391 100 -> Plus
X 18781078..18781191 392..507 98   Plus
X 18775579..18775629 17..67 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:06 Download gff for BO23639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18669612..18669662 17..67 100 -> Plus
arm_X 18674714..18675037 68..391 100 -> Plus
arm_X 18675111..18675224 392..507 98   Plus

BO23639.pep Sequence

Translation from 16 to 523

> BO23639.pep
MSDGIEVEQLVESKPRRMPLATSLEKDSIREAYEDVRSDLTDTEWAVFKF
DGAQIIVHARGQCFEEFRQQFGDSERAFGYIRIQMGDEMSKRKKFIFLTW
IGQEVGVIQRAKMSTDKALIKDVLNNFAVELQAGVEAELDIELFREALNR
AGGANYGTGIRDNASFLDH

BO23639.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6891-PA 163 CG6891-PA 1..163 1..163 829 100 Plus
CG6891-PC 146 CG6891-PC 1..146 18..163 746 100 Plus
CG6891-PB 146 CG6891-PB 1..146 18..163 746 100 Plus