BO23647.complete Sequence
994 bp assembled on 2010-04-14
GenBank Submission: KX794942
> BO23647.complete
GAAGTTATCAGTCGACATGAGTCGCACGGAGCAGACGTTGGAAGACCTGA
AGTCGTATTTGCGGAGTCACAGCAAAATCCGCGAGCAGCGGTCGCACATG
TCTAAGGTTCACTCGGTCTGCTGGAATGCCGATGGTCGTTACCTGGCCTC
CGGAAGCTTCGACAAGACGGTGGTCGTCTACTCGCTGGAGCGGGACCGCT
TCTTGAAGGGCAACACATACCGGGGACACACTGCGTCCGTGGACCAGCTG
TGTTGGCATCGCACCAATCCCGACCAGTTTGCCACCGCAAGCGGAGACAA
GACCGTGCGCATCTGGGACATACGAGTTGGAAAATGCGTATCGGTGACGA
ACACCAAGGGGGAGAATATCAACATTGCCTGGTCGCCCGATGGCAAAACG
ATCGCCGTGGGCAACAAGGAGGATCTGATCACCTTTATAGACACACGCAC
GAACAAGATTCGCGTGGAGGAGCCGTTCAGCTTCGAGGTCAACGAGATAT
CGTGGAACAACACCAACGACCTGTTCTTCCTAACCAACGGACTCGGCTGC
ATGCATATCCTCAGCTATCCCAGTCTCGAGCACCAGATGACCCTGAAGGC
CCATCCCGCCAACTGCATTTGCATTGAGTTCGGACCCACGGGTAAATACT
TTGCCACTGGCTCGGCGGACGCACAAGTCTCCTTGTGGGATGCCAACGAG
CTGGCCTGCCTGCGCATGATCAGCCGCCTGGAGTGGCCCGTCCGCACCAT
ATCGTTTAGCCACGACGAGCGAATGATTGCCTTGGCCAGCGAGGACCTCA
TTATCGACATTGCCTTCACGGAGACGGGCGAGCGGGTAACCGACATTCAC
GTGGACGCCTCCACGTTCACGGTGGCCTGGCATCCGAAGCAATACCTGCT
GGCCTACGCCTGCGATGAGAAGGACAACGATCGGCGACGTGACGCTGGCA
ACGTTAAGATATATGGCTTTTCGGAAGCAAGCTTTCTAGACCAT
BO23647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tex-RA | 963 | CG9615-PA | 1..960 | 17..976 | 4770 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tex-RA | 1063 | CG9615-RA | 71..1030 | 17..976 | 4770 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8307893..8308432 | 644..105 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 8307506..8307841 | 976..641 | 1665 | 99.7 | Minus |
3R | 32079331 | 3R | 8308484..8308575 | 108..17 | 445 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:11:08 has no hits.
BO23647.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:13 Download gff for
BO23647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tex-RA | 48..1007 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:25 Download gff for
BO23647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tex-RA | 71..1030 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:15 Download gff for
BO23647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tex-RA | 71..1030 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:15 Download gff for
BO23647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8307504..8307840 | 642..978 | 99 | <- | Minus |
3R | 8307896..8308430 | 107..641 | 100 | <- | Minus |
3R | 8308486..8308575 | 17..106 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:25 Download gff for
BO23647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4133226..4133562 | 642..978 | 99 | <- | Minus |
arm_3R | 4133618..4134152 | 107..641 | 100 | <- | Minus |
arm_3R | 4134208..4134297 | 17..106 | 98 | | Minus |
BO23647.pep Sequence
Translation from 16 to 994
> BO23647.pep
MSRTEQTLEDLKSYLRSHSKIREQRSHMSKVHSVCWNADGRYLASGSFDK
TVVVYSLERDRFLKGNTYRGHTASVDQLCWHRTNPDQFATASGDKTVRIW
DIRVGKCVSVTNTKGENINIAWSPDGKTIAVGNKEDLITFIDTRTNKIRV
EEPFSFEVNEISWNNTNDLFFLTNGLGCMHILSYPSLEHQMTLKAHPANC
ICIEFGPTGKYFATGSADAQVSLWDANELACLRMISRLEWPVRTISFSHD
ERMIALASEDLIIDIAFTETGERVTDIHVDASTFTVAWHPKQYLLAYACD
EKDNDRRRDAGNVKIYGFSEASFLDH
BO23647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tex-PA | 320 | CG9615-PA | 1..320 | 1..320 | 1708 | 100 | Plus |
CG3909-PA | 331 | CG3909-PA | 76..324 | 20..267 | 208 | 25.6 | Plus |
ebi-PA | 700 | CG4063-PA | 413..679 | 31..291 | 199 | 25.4 | Plus |
wds-PB | 361 | CG17437-PB | 71..351 | 27..303 | 187 | 25.1 | Plus |
wds-PA | 361 | CG17437-PA | 71..351 | 27..303 | 187 | 25.1 | Plus |
ebi-PA | 700 | CG4063-PA | 527..678 | 21..165 | 186 | 28.6 | Plus |