Clone BO23649 Report

Search the DGRC for BO23649

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:236
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG5377-RA
Protein status:BO23649.pep: Imported from assembly
Sequenced Size:868

Clone Sequence Records

BO23649.complete Sequence

868 bp assembled on 2010-04-13

GenBank Submission: KX799248

> BO23649.complete
GAAGTTATCAGTCGACATGCTGGGCAATCTGTGCCGGCTTGTGGGTGCCC
GTTCCCCGATCACCAGGCGCTTGCTGCACACGGAGCGGAAAGTTCGGGTG
AATGGCTCAGATTTGAACATTGTGGAGAGCGGCAGTGGGGAGCGGAGTCT
ACTCCTGATGCCGGGAGCACTGGGTTCCTCGTGGACCGACTTTAGGCCCC
AGATCGAGCAGCTGCCGAAACTGCTGCCGGGTCACACCATCATCGCCTGG
GATCCGCCGGGTTATGGCAAATCAGTGCCGCCGCAGCGCAAGTTCGGCCT
TGAATTCTTTCGGGAGGATGCCCAGGCAGCCGTGGATTTGATGCGTGCCC
TGGACAGACCACGCTTCTCCATTTTGGGCTGGAGCGATGGAGGCATCACG
GCGCTTATAGTCGCAGGTCGCCATGCGGAAGCTGTGGATCGCCTAGCAAT
CTGGGGAGCAGGTGCCTACTTGAACGCCGACGAAGTCAAGGCCCTTAAGA
ACATTCGGGATGTAGCCAAGTGGTCGCCGCGCATGCGTGAGCCCATGGAA
AAGGTTTACGGCGTCGAAAGATTCCCCCAATTGTGGGCCGAATGGGTGGA
CGCCGCATGCGCCTTCTATGACCAACGGGATGGAGACTTCTGTCGCACCG
AAGTTGAGAAAATAAAGATACCTACTTTTATACTCCACGGAAAGAAGGAT
CCCATGATAGCAGCGGAGCACATTCCTTGGCTGAGGGAGCGTTTGCCTCA
TGCGGAATATTATGAGTTCCCCGAGGGGAAGCATAATATCCATTTACGTT
ATGCGGAGGAGTTTAACAAACTGGTGGCCGATTTCTTTAACAAAAATAAC
GCAAGCTTTCTAGACCAT

BO23649.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5377-RA 837 CG5377-PA 1..834 17..850 4080 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5377-RA 1253 CG5377-RA 176..1009 17..850 4080 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22467149..22467982 850..17 4080 99.3 Minus
Blast to na_te.dros performed on 2014-11-26 15:27:52 has no hits.

BO23649.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:14 Download gff for BO23649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5377-RA 146..967 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:11 Download gff for BO23649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5377-RA 176..997 17..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:36 Download gff for BO23649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5377-RA 176..997 17..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:36 Download gff for BO23649.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22467161..22467982 17..838 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:11 Download gff for BO23649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18292883..18293704 17..838 99   Minus

BO23649.pep Sequence

Translation from 16 to 868

> BO23649.pep
MLGNLCRLVGARSPITRRLLHTERKVRVNGSDLNIVESGSGERSLLLMPG
ALGSSWTDFRPQIEQLPKLLPGHTIIAWDPPGYGKSVPPQRKFGLEFFRE
DAQAAVDLMRALDRPRFSILGWSDGGITALIVAGRHAEAVDRLAIWGAGA
YLNADEVKALKNIRDVAKWSPRMREPMEKVYGVERFPQLWAEWVDAACAF
YDQRDGDFCRTEVEKIKIPTFILHGKKDPMIAAEHIPWLRERLPHAEYYE
FPEGKHNIHLRYAEEFNKLVADFFNKNNASFLDH

BO23649.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5377-PA 278 CG5377-PA 1..278 1..278 1489 100 Plus