Clone BO23666 Report

Search the DGRC for BO23666

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:236
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG3817-RA
Protein status:BO23666.pep: Imported from assembly
Sequenced Size:862

Clone Sequence Records

BO23666.complete Sequence

862 bp assembled on 2010-04-13

GenBank Submission: KX798704

> BO23666.complete
GAAGTTATCAGTCGACATGGCTCTTTTGACTGAGAAGCGTGTTAAAAAGA
CACATGCTCCTGCGAGCGACAGTTCTCCGGAGGAATCCGATTCCGAGGGC
AGCCAGAATTCAGCCAGCGAAGCGGAGGGCAACGCCGGCTGGGCGGATTC
CATTCAGAAGGTCCTGAAGACCACCAAGCCGAAGACCCAAAAAAAAACCG
TGCTAGCTCGAGCCAAAAAAAGCCAGGCGGCTGTGCGATTCCAGAAAGAC
GCCGCCAACAAAAAGCCAGGATTCGATTTCGAGATCGAGAAAGCAGATGT
CAAGGAGGAGGACGAAGGCGATAACCATGAAGACGAGAAGCCGCAGGCCT
CTGCCTTGGATGCCACGCTAACCAAACAGCAGCGTAAGAATGTGCCCCTC
CAGCTGCGTGTGAAGCCCAGTTTCCGGGACATGGAGCGTGAACGAACGCT
CCGCAAAGTTGCCACTCGTGGAGTGGTGCAGTTCTTTAATGCCGTGCGCA
TTCAGCAGAAGGATCTGCAGCAGCAGCTGGAGGAAGCGGGTCCGCTGGAC
AGCCGACAGGATGCGGTGCTAAACAACATCAACAAGCGAAAGTTTTTGGA
CGTCCTGATGAGCGGGAAGCGCGCCAAATCCACACCCGTAGATAACGCTG
TAAAGAAAGAGGAACAAGAAACGGATGACGACGACGAAGACAAGGGCTCC
AGCGGCAAAAAGAAGTCCGAATGGAGTGTGCTGCGCGAGGACTTCATGAC
CAACAAGAAGATCAAGCACTGGGACGAGGAAGACGACGACGAGGAGGGTC
ACAATGATGAAGCTGATGACAGCGATTACGATGATGGGGAAGAAGCAAGC
TTTCTAGACCAT

BO23666.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3817-RA 831 CG3817-PA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3817-RA 879 CG3817-RA 15..842 17..844 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14898753..14899580 17..844 4140 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:19:39 has no hits.

BO23666.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:37 Download gff for BO23666.complete
Subject Subject Range Query Range Percent Splice Strand
CG3817-RA 41..868 17..846 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:13 Download gff for BO23666.complete
Subject Subject Range Query Range Percent Splice Strand
CG3817-RA 41..868 17..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:53 Download gff for BO23666.complete
Subject Subject Range Query Range Percent Splice Strand
CG3817-RA 15..842 17..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:53 Download gff for BO23666.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14898753..14899580 17..846 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:13 Download gff for BO23666.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10724475..10725302 17..846 99   Plus

BO23666.pep Sequence

Translation from 16 to 862

> BO23666.pep
MALLTEKRVKKTHAPASDSSPEESDSEGSQNSASEAEGNAGWADSIQKVL
KTTKPKTQKKTVLARAKKSQAAVRFQKDAANKKPGFDFEIEKADVKEEDE
GDNHEDEKPQASALDATLTKQQRKNVPLQLRVKPSFRDMERERTLRKVAT
RGVVQFFNAVRIQQKDLQQQLEEAGPLDSRQDAVLNNINKRKFLDVLMSG
KRAKSTPVDNAVKKEEQETDDDDEDKGSSGKKKSEWSVLREDFMTNKKIK
HWDEEDDDEEGHNDEADDSDYDDGEEASFLDH

BO23666.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3817-PA 276 CG3817-PA 1..276 1..276 1413 100 Plus