BO23682.complete Sequence
1138 bp assembled on 2012-04-24
GenBank Submission: KX794690
> BO23682.complete
GAAGTTATCAGTCGACATGTCGAAGCCGGGAACCCCCAAGCACGGCGCCG
GCTCATCCTCAGCAGCTGCTGCCCCCGAGAAGATTAGCAAATACAATATC
AGCACAGAGAAATGCGGGGATCTGACGGTCATAGTGCAGGGCGACCTGTC
ACAGCAGGAGAAACGCGCCGTGTTCATAACGGTTCACGACCTGGGCTGCA
ACCACAACTCATTCCAGGAGTTCGTGAGCAGTCCCTGCATGACGGAGATC
AAGGAGCGCTCCTGCTTCATCCACGTGGACGTGCCGGGGCACGCGGACAA
CGCGGAGGCCCTGGCTGACGGCTTTCCGTTTCCCTCGCTCCAGTCCCTGG
GCGAGGACCTGGTCACCGTGCTGGACTACCTGCACGTAAAGTACGTGATC
GGCCTAGGCGAGGGTGCCGGAGCCAATGTCCTGGCCCGCTTCGGACTGGC
CCATCCCAGCCGGGTGCTGGGCCTCATCCTGATCAACGCGACTGGCAGCG
CCGCCAGTGTAGTGCAGTCCTTCAAGAACAAGTTCATTAGCTGGAAGAGC
GACGAGGTGGCCCAGTCGGCTGAGAGCTTTCTGATGTACCACAAATTCGG
ACATGTTATGGAGCAAATCGTGGGCGAGAATCCGGACAAGGAGAAGATCG
TGGCCGAGTACCAGAAGCGTCTTCACCGATCCCTAAACAGCAAGAACATC
GGTCTCTATGTCAAAGCATTTATGAATCGCAAGGACCTTACGCTCAAGGG
CTGCAAGGTAGATGTCATCCTGATCACGGGCATGCTCAGCCCCTATGCGT
CCATGGTCGAGAAGCTCCATCGCGACGTGGAGAAGGAGAGGGTCACCATT
CTGAAGATCGAGCGGGCTGGCGATGTCCTCGCCGATGCTCCCGGAAAGGT
GGCCCAATCCATTCTGCTGTTCTGCAAGGGACAGGGGCTGCTCACGTCGG
TGGTGATGCCAGGCGTGGATCGCGGACGCGCCTTCTCCACGGCTAGCTCC
GGATCGCTGGAGGGGGCCAACGGATCGCGGCGCCTGTCGCGCGGCATCTC
GATGGAGGATTATGACAAGCCCAACATCCGCCGGCTCAGCATCATGAACA
GTGAGTTGCCCAAGAAGGAGGCAAGCTTTCTAGACCAT
BO23682.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:26:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RG | 1107 | CG2082-PG | 1..1104 | 17..1120 | 5520 | 100 | Plus |
| CG2082-RA | 1098 | CG2082-PA | 1..1095 | 17..1120 | 5350 | 99.2 | Plus |
| CG2082-RK | 1095 | CG2082-PK | 61..1092 | 89..1120 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RG | 1872 | CG2082-RG | 197..1301 | 16..1120 | 5525 | 100 | Plus |
| CG2082-RA | 1863 | CG2082-RA | 197..1292 | 16..1120 | 5355 | 99.2 | Plus |
| CG2082-RK | 2290 | CG2082-RK | 388..1419 | 89..1120 | 5160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5762172..5762500 | 532..204 | 1645 | 100 | Minus |
| 3R | 32079331 | 3R | 5760141..5760371 | 1120..890 | 1155 | 100 | Minus |
| 3R | 32079331 | 3R | 5760630..5760792 | 889..727 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 5760849..5760963 | 726..612 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 5761644..5761719 | 606..531 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 5771630..5771702 | 88..16 | 365 | 100 | Minus |
| 3R | 32079331 | 3R | 5762557..5762622 | 203..138 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 5762704..5762755 | 140..89 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:26:42 has no hits.
BO23682.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 11:44:46 Download gff for
BO23682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 374..1411 | 82..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:27 Download gff for
BO23682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RG | 183..1286 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:54 Download gff for
BO23682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RG | 198..1301 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:22 Download gff for
BO23682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RG | 198..1301 | 17..1122 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:22 Download gff for
BO23682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5760630..5760792 | 727..889 | 100 | <- | Minus |
| 3R | 5760849..5760961 | 614..726 | 100 | <- | Minus |
| 3R | 5761636..5761717 | 533..613 | 95 | <- | Minus |
| 3R | 5760139..5760371 | 890..1122 | 99 | <- | Minus |
| 3R | 5762172..5762500 | 204..532 | 100 | <- | Minus |
| 3R | 5762557..5762620 | 140..203 | 100 | <- | Minus |
| 3R | 5762705..5762755 | 89..139 | 100 | <- | Minus |
| 3R | 5771630..5771701 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:54 Download gff for
BO23682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1586352..1586514 | 727..889 | 100 | <- | Minus |
| arm_3R | 1586571..1586683 | 614..726 | 100 | <- | Minus |
| arm_3R | 1587358..1587439 | 533..613 | 95 | <- | Minus |
| arm_3R | 1585861..1586093 | 890..1122 | 99 | <- | Minus |
| arm_3R | 1587894..1588222 | 204..532 | 100 | <- | Minus |
| arm_3R | 1588279..1588342 | 140..203 | 100 | <- | Minus |
| arm_3R | 1588427..1588477 | 89..139 | 100 | <- | Minus |
| arm_3R | 1597352..1597423 | 17..88 | 100 | | Minus |
BO23682.pep Sequence
Translation from 16 to 1138
> BO23682.pep
MSKPGTPKHGAGSSSAAAAPEKISKYNISTEKCGDLTVIVQGDLSQQEKR
AVFITVHDLGCNHNSFQEFVSSPCMTEIKERSCFIHVDVPGHADNAEALA
DGFPFPSLQSLGEDLVTVLDYLHVKYVIGLGEGAGANVLARFGLAHPSRV
LGLILINATGSAASVVQSFKNKFISWKSDEVAQSAESFLMYHKFGHVMEQ
IVGENPDKEKIVAEYQKRLHRSLNSKNIGLYVKAFMNRKDLTLKGCKVDV
ILITGMLSPYASMVEKLHRDVEKERVTILKIERAGDVLADAPGKVAQSIL
LFCKGQGLLTSVVMPGVDRGRAFSTASSGSLEGANGSRRLSRGISMEDYD
KPNIRRLSIMNSELPKKEASFLDH
BO23682.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-PG | 368 | CG2082-PG | 1..368 | 1..368 | 1874 | 100 | Plus |
| CG2082-PA | 365 | CG2082-PA | 1..365 | 1..368 | 1846 | 99.2 | Plus |
| CG2082-PK | 364 | CG2082-PK | 21..364 | 25..368 | 1753 | 100 | Plus |
| CG2082-PB | 364 | CG2082-PB | 21..364 | 25..368 | 1753 | 100 | Plus |
| CG2082-PJ | 361 | CG2082-PJ | 21..361 | 25..368 | 1725 | 99.1 | Plus |
