Clone BO23718 Report

Search the DGRC for BO23718

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:237
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG14509-RB
Protein status:BO23718.pep: Imported from assembly
Sequenced Size:1441

Clone Sequence Records

BO23718.complete Sequence

1441 bp assembled on 2012-04-24

GenBank Submission: KX799073

> BO23718.complete
GAAGTTATCAGTCGACATGAGATTAGATGGGGCTCTAGAGCCCCGGCCCC
GTCAAGGAGCTGCCACAATCAAGGGCCGCCAGCCCCTGAGGCGCGAAACA
CGCGAACCATGTGAGACGCAACAGCAGCAGCCAGCTGACGAAGACGACGA
GGCCACAGACGCTGAGTGTTTGACCACCAACAGCAGCAGCAGCAGCAGCA
GCACCAGCAGCACCAGCAGCAACAATTGCCAAGCCAACTTGGTCTGCAAT
CCAAAGAGAACAACATCAGCAACGCCCACGCCTAGAAAAACAACCGGCGG
CAGAGGCAATACCAGGCATACCATATTAATGGCGCCCAACGTGGGGCATC
AGCGGAAGAGCCTTGGCCTGCGACTTCCGATGAAGCAGGGCCGCAGCCGG
CGGAGAATGATGGGTGCGGAATGGGGCTGGGAGCGCCTTAACGGCCTGCT
CCTGTGCCTGATTTCCGTTATTGCCCTGCTGCCGCCGCTGACGCTCGGCG
ATGACGGCGATAATTTCTTTGCCGTGAATGCCTTTAGTGCGGGTCCGGAG
ACGACAACGCCAGAGTTCGATTATGCCAGTCGTGGGCAGAAGAAGTTCGG
CGACAAGTGCGATAATACCCTGGAATGCGGCTTCCCCGGCTCCATCTGCG
ATCCCAAGAAGAAGTCCTGCCAGTGCACCGAGGATCTGCCCGTCACCAAT
CACTATGACAAATGTGGCAAAGAGGCCGCCGTGAACGAGTCCTGCTTCTT
TAACGAGCAGTGCGAGATGAGATACTTCCAGACGGAGTGCCGCGATGGAC
GCTGCATCTGCCGGTTCGAGATGTCACCCATTTGGGGCAAGGACGGATCC
GTGGAGTGCAAAGGGCGCCAGGACAAGAGGGGACCCGAGACCTACATCGA
CCCGGCCATGATTGGCGTGCTGGTAGGAATGGCATTGATGTTTGTTATTA
TTTGTGTCGTCCTGCGATTGTTTAGCCAAGCTCGCTGGCGTGAGAACCGA
ACCATCTTCAACACGCCCAATCCTCGCCTGATGAACGTCTCCCTGCTGCG
GGACAGCAAGCTGCTCCACGGCCAGGAGCGCCGAGGGTCCAGGATGTCGG
TGCGAGCGCCATCTCGTCAGCCCAGCATGGCCTCCCTGCGGCCCCACTCC
CCCAATCCGTCGCTAGGCTCCCATTCCGAGTCGCATGGCAGCAATGCATC
CGCAGCCTCGGTGCGCTCCAACCGCAGCAACTCGGTGGCTCCCGGCAAGG
TCGTCCACCATGAGCGCCACGGATCCGCCCATCGCCAGCACCACCCACAT
GGCCACCAGCCGAAGGAGCAGCCGCAGTCGCCGCAGTCGCAGGACCAGTC
GCTGATCACCAACATCACCACGAATCCGGTGGCCGAGAGCGTTACCGTCG
AGATCATCGAGCCGGGTCAGAAGGCAAGCTTTCTAGACCAT

BO23718.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14509-RB 1410 CG14509-PB 1..1407 17..1423 7035 100 Plus
CG14509-RD 1419 CG14509-PD 1..1416 17..1423 6910 99.4 Plus
CG14509-RE 1521 CG14509-PE 1..1151 17..1167 5755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14509-RB 2129 CG14509-RB 269..1675 17..1423 7035 100 Plus
CG14509-RD 4231 CG14509-RD 269..1684 17..1423 6910 99.4 Plus
CG14509-RE 4716 CG14509-RE 268..1418 17..1167 5755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29181159..29181711 569..17 2765 100 Minus
3R 32079331 3R 29173738..29173996 1423..1165 1295 100 Minus
3R 32079331 3R 29176554..29176742 1167..979 945 100 Minus
3R 32079331 3R 29178667..29178820 722..569 770 100 Minus
3R 32079331 3R 29177599..29177742 864..721 720 100 Minus
3R 32079331 3R 29177389..29177505 978..862 585 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:37:11 has no hits.

BO23718.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 11:27:40 Download gff for BO23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 269..1675 17..1425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:14 Download gff for BO23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 269..1675 17..1425 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:37 Download gff for BO23718.complete
Subject Subject Range Query Range Percent Splice Strand
CG14509-RB 269..1675 17..1425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:37 Download gff for BO23718.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29176555..29176742 979..1166 100 <- Minus
3R 29177389..29177503 864..978 100 <- Minus
3R 29177600..29177740 723..863 100 <- Minus
3R 29178667..29178819 570..722 100 <- Minus
3R 29173736..29173994 1167..1425 99 <- Minus
3R 29181159..29181711 17..569 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:14 Download gff for BO23718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25004389..25004541 570..722 100 <- Minus
arm_3R 24999458..24999716 1167..1425 99 <- Minus
arm_3R 25002277..25002464 979..1166 100 <- Minus
arm_3R 25003111..25003225 864..978 100 <- Minus
arm_3R 25003322..25003462 723..863 100 <- Minus
arm_3R 25006881..25007433 17..569 100   Minus

BO23718.pep Sequence

Translation from 16 to 1441

> BO23718.pep
MRLDGALEPRPRQGAATIKGRQPLRRETREPCETQQQQPADEDDEATDAE
CLTTNSSSSSSSTSSTSSNNCQANLVCNPKRTTSATPTPRKTTGGRGNTR
HTILMAPNVGHQRKSLGLRLPMKQGRSRRRMMGAEWGWERLNGLLLCLIS
VIALLPPLTLGDDGDNFFAVNAFSAGPETTTPEFDYASRGQKKFGDKCDN
TLECGFPGSICDPKKKSCQCTEDLPVTNHYDKCGKEAAVNESCFFNEQCE
MRYFQTECRDGRCICRFEMSPIWGKDGSVECKGRQDKRGPETYIDPAMIG
VLVGMALMFVIICVVLRLFSQARWRENRTIFNTPNPRLMNVSLLRDSKLL
HGQERRGSRMSVRAPSRQPSMASLRPHSPNPSLGSHSESHGSNASAASVR
SNRSNSVAPGKVVHHERHGSAHRQHHPHGHQPKEQPQSPQSQDQSLITNI
TTNPVAESVTVEIIEPGQKASFLDH

BO23718.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14509-PB 469 CG14509-PB 1..469 1..469 2511 100 Plus
CG14509-PD 472 CG14509-PD 1..472 1..469 2497 99.4 Plus
CG14509-PC 509 CG14509-PC 1..428 1..428 2088 91.8 Plus
CG14509-PE 506 CG14509-PE 1..425 1..428 2082 92.1 Plus