BO23723.complete Sequence
2896 bp assembled on 2010-05-06
GenBank Submission: KX794240
> BO23723.complete
GAAGTTATCAGTCGACATGGCGGACCTAATACATTTGGGAAACATTGATG
TTGTCATCCAGAAAGATAAGCCCGGATCGCCAACGGGCTGTTCGGATGAT
GGGAATCTTGCGGGGCTGGGTGGCATGACCGGATTGGGTGGCATAATGGC
ACCTGGCGGCATCGACTTGGGTGACTTGGCTCAGGAATTGGATCACGATG
AATTCGATGGACCACATATGCTGAATGGTGAACGTCCAGCGATTATTGCT
CCTCCGGAAAGCGAATGGTACCATGGACGACTCGATCGCTACTCTGCAGA
GTCTCGCCTACGCGGAAGCAGTAAACTGGGCAGCTATTTAGTTCGCGAAA
GTGACCGCAAACCTGGCTCCTATGTTCTGAGTTATTATGGCCGCACCGGC
ATAAATCATTTTCGGATTACAGCTGTGTGCGGAGACTTCTATATCGGAGG
ACGACAATTCATTTCCTTAAGCGACTTGGTTGGTTACTATACCTCATGTA
GTGATCTACTGAAACGCGAACGCTTGGCCATACCAGTTGCTCCGCCGGAG
CCAGTTAATGATAAGAAACGCGTCGTAGCCATCCTGCCTTACACAAAAAT
GCCAGAGACCGATGAACTGAGTTTCCAGAAAGGTGATATCTTTTTTGTAC
ACAATGACATGGGCGATGGCTGGTTGTGGGTGACTGCCCATCGTACGGGC
GAGCAGGGAATGATATTCAGAGAACTTGTTGACGATCTGGATGTATCTAT
CGATCCAAATACGGTGTTTCCCTGGTTCCATCCCAACTGCACCAAAAACG
AAGCCGTCGATATGTTGGTTAAAGCTGGACCAGGAAGTTTCCTCGTTCGC
CCAAGTGACAACTCACCGGGGGATTACTCTCTATTCTTTCATATAAACAA
TCAAATCCAACGCTTTCGTATTGAAAAGAAAGGCGTGCGCTATTTAATGG
GCGGTCGTACATTCGAATGCTTGGATGCGGTTATAAATCGATATCGCAAA
GAGCAAATTGTGGAGGGCCACTCACTGAACCATCCAGTTGTCAATGGCAT
TCAGCCCGAGTTCAATCAGCAATATGTTGTGGAAAAGGCCGCTGAAAAGA
TCTACGCAACATTGCGCGAGTGTCGTGACCAAATCGGTCTCAAAAAGATC
AAGGGAATCAAACATCACGGCCATTTGAACAAGAAGTCGGACAAAACGAC
GAAATGGAAGCAACTCTATTTCGCTTTAATCAACGATGGTTCCGAGACGC
AACTATGCTTCTACGACAATCCGAAGAAGACCAAACCGAAGGGTCTGATC
GATTTGTCCTGTGCTTACCTCTATCAATGTCACGATTCGCTGTGGGAGCG
TCCCTATTGCTTCCAAATTGTCGAAAGGGCCCTGCCATGCTTGGCCACAG
TGACGTATCTGTGTGCTCCTAGTCAGGAAAGCTACGTGGAGTGGATTAAT
TCGCTCAAGGCACAATGCGATTCCCAGCTGAGTCGTGCCCAGAAGAAGGT
ATCACGCCTTCGTGAGCTTCGTTGTCTTAATCTGCATGTGCTGGAAGCTC
ATCGATTACCATTTAAACTAGTGCCACATCCATACTGCAGTATTTCCCTC
AATCAAGTCAAAGTGGGCAAAACTCGTGTCAAAATTGCACCCGAACCCGT
TTGGGAAGAGGAGTTTGTGCTAGACGATGTTCCGCCAGATGTTGTCTCCC
TAACCATAACATTAATATCGCGCGGCAAACGCGGTAAGGACTCCGAAGTG
GCTGAGCTAACCATTGACTTGTCTAGTCTAAAGAATGGCCAGGAAACCGA
GGGCTGGTACCAACTCACTGGCATGACGCCGATGGGTGAATGGGGCTCGC
TACGATTGCGTATGCGCTACCTCGACGATCTGATAATGCCGTGTGAAGAG
TACAGTCCTCTGCAGCAATTGCTCCTCGAATCGGAGCTGTATGCTGTGAA
GGCGCTGGCTGAATTGTGCCATAATGATCGGGTTCCTTTGGCCACGGCTC
TGTTGCGAGTCTTTAGGCAGGAGAAACGGGAAACGGAACTAATTCGAATG
CTGTGCCAAGCGGAGGTGACGCGCGAAAACGAAACCACAACGCTTTTCCG
TGGCGCATCCTTGGCCACCACCCTAATGGATCTATATATGCGCACCGAAT
GCAGCGGCTTCCTGCAATCGGCCGTCAGCGAAACCGTGCAGCGCATTTTG
GAGAGCAAGCAGTCGGCTGAATTGAATCCCACGAAAATGGACGTCAACGA
TGATGCCTGTACGAATGCCGAGTTTCTATTGCAAATCCTCGATCTGGTCA
CCCAGTCGATATTCACTTCACCGGACGCCTGTCCACGCAACGTGCGTTTC
ATTTGCAGCTGTCTTCAGAAGGCTGTGATGGCCAAATGGCCGACAGAGCG
GCTCGTTCGCACACGCGTCGTCTCTGGCTTTATATTCTTGCGCCTTCTGT
GCCCAGCGCTGCTCAATCCACGCCAATTTGGATTGGTCAGCGAGACGCCA
CCGATGGCAGCAACACGATCTTTGGTCATGGTCGCCAAGTGTCTGCAGAA
TCTGGCCAACTTGATTGAATTCGGCGGCAAGGAACAATACATGGAGGTTG
TCAATCCGTTTATCTTGAAGAACAAGGAGCGTATGATTGTTTTCTTGGAT
CAACTGTCCTCGGTGAACGATCCGAACCAACCGCTTGGAATGTTTGTCGA
ACAAAGTACAAATCTGAATTCACAAGACACTGGACGCGAGCTGGCTACCT
TGCATCACATCTGCGTATCTCATTCGCAAGAACTGCACGAGCTATCCAAC
ATACTTTCAATTAAGAAGCTGGTCACAGTGACGGACATGCTGACCAAACA
CAAGCTGAAGTATCGCGAGATGATCAGCGCAAGCTTTCTAGACCAT
BO23723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vap-RF | 2865 | CG9209-PF | 1..2862 | 17..2878 | 14310 | 100 | Plus |
| vap-RE | 2865 | CG9209-PE | 1..2862 | 17..2878 | 14310 | 100 | Plus |
| vap-RC | 2865 | CG9209-PC | 1..2862 | 17..2878 | 14310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vap-RF | 3845 | CG9209-RF | 772..3633 | 17..2878 | 14310 | 100 | Plus |
| vap-RE | 4340 | CG9209-RE | 990..3851 | 17..2878 | 14310 | 100 | Plus |
| vap-RC | 3543 | CG9209-RC | 470..3331 | 17..2878 | 14310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16000883..16001790 | 2582..1675 | 4540 | 100 | Minus |
| X | 23542271 | X | 16001863..16002714 | 1674..823 | 4260 | 100 | Minus |
| X | 23542271 | X | 16002886..16003296 | 824..414 | 2055 | 100 | Minus |
| X | 23542271 | X | 16003713..16003925 | 229..17 | 1065 | 100 | Minus |
| X | 23542271 | X | 16000667..16000820 | 2733..2580 | 770 | 100 | Minus |
| X | 23542271 | X | 16000440..16000586 | 2878..2732 | 735 | 100 | Minus |
| X | 23542271 | X | 16003529..16003643 | 341..227 | 575 | 100 | Minus |
| X | 23542271 | X | 16003376..16003451 | 415..340 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:01 has no hits.
BO23723.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-06 09:24:31 Download gff for
BO23723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vap-RB | 385..3246 | 17..2880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:56 Download gff for
BO23723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vap-RC | 470..3331 | 17..2880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:05 Download gff for
BO23723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vap-RC | 470..3331 | 17..2880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:05 Download gff for
BO23723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16000438..16000585 | 2733..2880 | 98 | <- | Minus |
| X | 16000668..16000818 | 2582..2732 | 100 | <- | Minus |
| X | 16000884..16001790 | 1675..2581 | 100 | <- | Minus |
| X | 16001863..16002712 | 825..1674 | 100 | <- | Minus |
| X | 16002886..16003295 | 415..824 | 100 | <- | Minus |
| X | 16003377..16003449 | 342..414 | 100 | <- | Minus |
| X | 16003529..16003642 | 228..341 | 100 | <- | Minus |
| X | 16003715..16003925 | 17..227 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:56 Download gff for
BO23723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15897410..15897482 | 342..414 | 100 | <- | Minus |
| arm_X | 15897562..15897675 | 228..341 | 100 | <- | Minus |
| arm_X | 15894471..15894618 | 2733..2880 | 98 | <- | Minus |
| arm_X | 15894701..15894851 | 2582..2732 | 100 | <- | Minus |
| arm_X | 15894917..15895823 | 1675..2581 | 100 | <- | Minus |
| arm_X | 15895896..15896745 | 825..1674 | 100 | <- | Minus |
| arm_X | 15896919..15897328 | 415..824 | 100 | <- | Minus |
| arm_X | 15897748..15897958 | 17..227 | 100 | | Minus |
BO23723.pep Sequence
Translation from 16 to 2896
> BO23723.pep
MADLIHLGNIDVVIQKDKPGSPTGCSDDGNLAGLGGMTGLGGIMAPGGID
LGDLAQELDHDEFDGPHMLNGERPAIIAPPESEWYHGRLDRYSAESRLRG
SSKLGSYLVRESDRKPGSYVLSYYGRTGINHFRITAVCGDFYIGGRQFIS
LSDLVGYYTSCSDLLKRERLAIPVAPPEPVNDKKRVVAILPYTKMPETDE
LSFQKGDIFFVHNDMGDGWLWVTAHRTGEQGMIFRELVDDLDVSIDPNTV
FPWFHPNCTKNEAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQIQRF
RIEKKGVRYLMGGRTFECLDAVINRYRKEQIVEGHSLNHPVVNGIQPEFN
QQYVVEKAAEKIYATLRECRDQIGLKKIKGIKHHGHLNKKSDKTTKWKQL
YFALINDGSETQLCFYDNPKKTKPKGLIDLSCAYLYQCHDSLWERPYCFQ
IVERALPCLATVTYLCAPSQESYVEWINSLKAQCDSQLSRAQKKVSRLRE
LRCLNLHVLEAHRLPFKLVPHPYCSISLNQVKVGKTRVKIAPEPVWEEEF
VLDDVPPDVVSLTITLISRGKRGKDSEVAELTIDLSSLKNGQETEGWYQL
TGMTPMGEWGSLRLRMRYLDDLIMPCEEYSPLQQLLLESELYAVKALAEL
CHNDRVPLATALLRVFRQEKRETELIRMLCQAEVTRENETTTLFRGASLA
TTLMDLYMRTECSGFLQSAVSETVQRILESKQSAELNPTKMDVNDDACTN
AEFLLQILDLVTQSIFTSPDACPRNVRFICSCLQKAVMAKWPTERLVRTR
VVSGFIFLRLLCPALLNPRQFGLVSETPPMAATRSLVMVAKCLQNLANLI
EFGGKEQYMEVVNPFILKNKERMIVFLDQLSSVNDPNQPLGMFVEQSTNL
NSQDTGRELATLHHICVSHSQELHELSNILSIKKLVTVTDMLTKHKLKYR
EMISASFLDH
BO23723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vap-PF | 954 | CG9209-PF | 1..954 | 1..954 | 5018 | 100 | Plus |
| vap-PE | 954 | CG9209-PE | 1..954 | 1..954 | 5018 | 100 | Plus |
| vap-PC | 954 | CG9209-PC | 1..954 | 1..954 | 5018 | 100 | Plus |
| vap-PB | 954 | CG9209-PB | 1..954 | 1..954 | 5018 | 100 | Plus |
| vap-PA | 954 | CG9209-PA | 1..954 | 1..954 | 5018 | 100 | Plus |
