BO23743.complete Sequence
2929 bp assembled on 2010-05-06
GenBank Submission: KX798683
> BO23743.complete
GAAGTTATCAGTCGACATGAAAAAAGAACTGTCCGGAAATAGCTCAGCCC
GCTGGCCACAGATGTTCGGTGGGAATTCCAGAGAAGCAGGCATGTGGCAG
CGCATACTTTTGCTCGGCTGCATGTGGAGTGCATTTTTCATGTGCCGCAG
CCGGGGGCAACAAATCAACATTGGCGCCTTCTTCTACGACGATGAGCTGG
AGCTGGAGAAAGAGTTCATGACGGTGGTCAATGCCATCAATGGACCTGAA
TCGGAACAGACGATGCGTTTCTATCCGCTCATAAAGCGCCTGAAGCCCGA
GGATGGGAGTGTCACAATGCAGGAACATGCCTGCGATCTCATAGATAATG
GTGTCGCGGCTATTTTCGGACCAAGTTCAAAGGCGGCGAGCGACATTGTG
GCCTTGGTGTGCAATAGTACCGGCATTCCGCACATAGAGTTCGACATATC
GGACGAGGGCATTCAGGCCGAGAAGCCCAACCACCAAATGACCCTTAACC
TCTACCCGGCCCAGGCCATATTGTCCAAGGCCTACGCGGATATTGTACAA
AACTTTGGGTGGCGCAAGTTCACCATTGTCTACGATGCGGACGATGCCAG
GGCAGCAGCTCGACTGCAGGATCTTCTGCAGCTGCGAGAGGTTCACAATG
ATGTGGTGCGGGTGCGAAAGTTCCACAAGGATGACGACTTCCGGGTCATG
TGGAAGAGCATACGGGGCGAGCGGCGAGTGGTTTTGGACTGTGAGCCCAA
CATGCTGGTGGAGCTTCTGAATTCCTCCACTGAGTTCGGTCTGACTGGAC
AGTACAATCATATATTCCTGACGAACCTGGAAACCTACACCGATCATCTG
GAGGAACTAGCGGCGGATAACGAAACATTTGCCGTGAACATAACTGCTGC
TCGTCTTTTGGTCAATCCCGATCCTCCGCCGTACTCCCTACCTTACGGAT
ATGTCACCCAAAGGGACAACATCGTTTACGAAAGCAGCGATCCGCCTCGC
ACCCTCATCCACGACTTGATACATGATGCACTGCAGCTTTTTGCGCAGTC
CTGGCGCAATGCCAGCTTCTTCTACCCGGACAGGATGGTGGTGCCGCGAA
TAACCTGCGACTTTGCCGCATCCGGAGGTCGCACCTGGGCCATGGGGCGT
TATCTGGCACGCCTCATGAAAGGGACTTCCGGCGTGAACAACACGAACTT
TCGGACAAGTATCCTGCAGTTCGACGAGGATGGACAGCGGATAACGTTCA
ACATCGAGGTCTACGACCCCTTGGACGGCATTGGCATAGCCATCTGGGAC
CCTCGGGGTCAGATAACGCAGCTCAATGTGGACGTCAAGGCGCAGAAGAA
GATGATTTACCGGGTGGCCACCAGAATTGGCCCACCATACTTCTCGTACA
ACGAGACTGCGAGGGAGCTGAATCTGACGGGCAACGCCCTCTATCAAGGA
TATGCCGTGGACCTTATCGACGCCATTGCCAGACACGTGGGATTCGAGTA
CGTCTTCGTTCCCGTGGCTGATCAGCAGTACGGAAAACTGGACAAGGAAA
CCAAGCAGTGGAACGGCATCATTGGCGAGATAATCAATAATGATGCACAC
ATGGGAATCTGCGACCTGACCATCACCCAAGCGCGAAAGACCGCTGTGGA
TTTTACAGTGCCCTTTATGCAGCTGGGTGTCAGTATCCTGGCATACAAAA
GTCCGCATGTGGAAAAGACACTCGATGCATACCTGGCACCTTTTGGGGGA
GAAGTCTGGATCTGGATTCTCATATCCGTGTTCGTAATGACCTTCCTCAA
GACCATAGTAGCGAGGATCTCCAAAATGGACTGGGAGAACCCACATCCGT
GCAATCGGGATCCCGAGGTACTCGAGAATCAGTGGCGCATCCACAATACT
GGCTGGTTGACTGTGGCCTCCATCATGACAGCAGGATGCGACATTCTACC
GAGAAGTCCACAGGTGCGAATGTTTGAGGCCACGTGGTGGATTTTTGCCA
TCATCATAGCCAACTCCTATACGGCCAACTTAGCTGCGTTTTTGACCAGC
TCCAAAATGGAGGGCAGCATAGCCAACCTGAAGGATCTGAGTGCCCAGAA
GAAAGTGAAGTTCGGTACCATCTACGGCGGGAGTACGTACAATCTCCTGG
CTGACTCCAACGAGACCGTCTATCGCCTGGCCTTCAATCTCATGAACAAC
GACGACCCATCCGCCTACACAAAGGACAATCTGGAAGGTGTTGACCGCGT
GCGGAAGAATCGAGGGGACTACATGTTCCTCATGGAGACCACCACCTTGG
AGTACCATCGCGAGCAGAACTGCGACCTGCGCTCCGTTGGAGAAAAGTTC
GGGGAGAAGCACTACGCCATTGCGGTTCCCTTTGGGGCTGAGTACAGATC
CAACCTGAGTGTGGCCATCCTGAAGCTGAGTGAGCGGGGTGAGCTGTACG
ATCTCAAGCAAAAGTGGTGGAAGAACCCGAATGCCAGCTGCTTCGAGGAA
CCCGATCCCGATGCCACTCCTGACATGACCTTCGAGGAGCTGCGCGGCAT
ATTCTACACGCTCTACGCCGGAATCCTGATTGCCTTTCTCATCGGCATTA
CGGAGTTTTTGGTCTACGTGCAGCAAGTGGCTTTGGAAGAAAGGCTCACT
TTTAAGGACGCCTTCAAGAAGGAGATCCGCTTTGTGCTTTGCGTATGGAA
CAATAGGAAACCCATCGTGGCAGGCACTCCAATCTCCAGTGTCAGGACTA
CACCGCGAAGATCATTGGATAAGTCACTGGACCGCACTCCCAAGTCGAGC
CGCCGAGTTGTCATCGGGCGTTCATCGGAGGAGATGCGCGAAATGGCCCA
AGGATCTGGTTCCTCCTCGGGAAGTAACAACGCAGGAAGGGGAGAAAAGG
AGGCAAGGGTCGCAAGCTTTCTAGACCAT
BO23743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluRIIC-RD | 2823 | CG4226-PD | 1..2820 | 92..2911 | 14100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluRIIC-RD | 3004 | CG4226-RD | 37..2932 | 16..2911 | 14480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 916704..917387 | 1961..2644 | 3420 | 100 | Plus |
| 2L | 23513712 | 2L | 915814..916232 | 1174..1592 | 2095 | 100 | Plus |
| 2L | 23513712 | 2L | 916282..916656 | 1592..1966 | 1875 | 100 | Plus |
| 2L | 23513712 | 2L | 917466..917733 | 2644..2911 | 1340 | 100 | Plus |
| 2L | 23513712 | 2L | 915503..915750 | 927..1174 | 1225 | 99.6 | Plus |
| 2L | 23513712 | 2L | 915057..915269 | 596..808 | 1065 | 100 | Plus |
| 2L | 23513712 | 2L | 914799..915003 | 392..596 | 1025 | 100 | Plus |
| 2L | 23513712 | 2L | 914122..914280 | 16..174 | 795 | 100 | Plus |
| 2L | 23513712 | 2L | 914337..914493 | 173..329 | 785 | 100 | Plus |
| 2L | 23513712 | 2L | 915325..915447 | 809..931 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 914552..914615 | 329..392 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:38:54 has no hits.
BO23743.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-06 09:24:35 Download gff for
BO23743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIIC-RC | 34..2928 | 17..2913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:10 Download gff for
BO23743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIIC-RD | 38..2932 | 17..2913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:22 Download gff for
BO23743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIIC-RD | 38..2932 | 17..2913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:22 Download gff for
BO23743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 914123..914279 | 17..173 | 100 | -> | Plus |
| 2L | 914338..914493 | 174..329 | 100 | -> | Plus |
| 2L | 914553..914615 | 330..392 | 100 | -> | Plus |
| 2L | 914800..915003 | 393..596 | 100 | -> | Plus |
| 2L | 915058..915269 | 597..808 | 100 | -> | Plus |
| 2L | 915325..915447 | 809..931 | 100 | -> | Plus |
| 2L | 915508..915750 | 932..1174 | 100 | -> | Plus |
| 2L | 915815..916231 | 1175..1591 | 100 | -> | Plus |
| 2L | 916282..916653 | 1592..1963 | 100 | -> | Plus |
| 2L | 916707..917387 | 1964..2644 | 100 | -> | Plus |
| 2L | 917467..917733 | 2645..2913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:10 Download gff for
BO23743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 914123..914279 | 17..173 | 100 | -> | Plus |
| arm_2L | 914338..914493 | 174..329 | 100 | -> | Plus |
| arm_2L | 914553..914615 | 330..392 | 100 | -> | Plus |
| arm_2L | 914800..915003 | 393..596 | 100 | -> | Plus |
| arm_2L | 915058..915269 | 597..808 | 100 | -> | Plus |
| arm_2L | 915325..915447 | 809..931 | 100 | -> | Plus |
| arm_2L | 915508..915750 | 932..1174 | 100 | -> | Plus |
| arm_2L | 915815..916231 | 1175..1591 | 100 | -> | Plus |
| arm_2L | 916282..916653 | 1592..1963 | 100 | -> | Plus |
| arm_2L | 916707..917387 | 1964..2644 | 100 | -> | Plus |
| arm_2L | 917467..917733 | 2645..2913 | 99 | | Plus |
BO23743.pep Sequence
Translation from 16 to 2929
> BO23743.pep
MKKELSGNSSARWPQMFGGNSREAGMWQRILLLGCMWSAFFMCRSRGQQI
NIGAFFYDDELELEKEFMTVVNAINGPESEQTMRFYPLIKRLKPEDGSVT
MQEHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGIQ
AEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKFTIVYDADDARAAARL
QDLLQLREVHNDVVRVRKFHKDDDFRVMWKSIRGERRVVLDCEPNMLVEL
LNSSTEFGLTGQYNHIFLTNLETYTDHLEELAADNETFAVNITAARLLVN
PDPPPYSLPYGYVTQRDNIVYESSDPPRTLIHDLIHDALQLFAQSWRNAS
FFYPDRMVVPRITCDFAASGGRTWAMGRYLARLMKGTSGVNNTNFRTSIL
QFDEDGQRITFNIEVYDPLDGIGIAIWDPRGQITQLNVDVKAQKKMIYRV
ATRIGPPYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPV
ADQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPF
MQLGVSILAYKSPHVEKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVAR
ISKMDWENPHPCNRDPEVLENQWRIHNTGWLTVASIMTAGCDILPRSPQV
RMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVKFG
TIYGGSTYNLLADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRG
DYMFLMETTTLEYHREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVA
ILKLSERGELYDLKQKWWKNPNASCFEEPDPDATPDMTFEELRGIFYTLY
AGILIAFLIGITEFLVYVQQVALEERLTFKDAFKKEIRFVLCVWNNRKPI
VAGTPISSVRTTPRRSLDKSLDRTPKSSRRVVIGRSSEEMREMAQGSGSS
SGSNNAGRGEKEARVASFLDH
BO23743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluRIIC-PD | 940 | CG4226-PD | 1..940 | 26..965 | 4936 | 100 | Plus |
| GluRIIA-PI | 907 | CG6992-PI | 12..906 | 30..932 | 1812 | 42.7 | Plus |
| GluRIIB-PI | 913 | CG7234-PI | 25..911 | 50..931 | 1673 | 39.2 | Plus |
| clumsy-PB | 1002 | CG8681-PB | 24..871 | 49..900 | 1483 | 37.6 | Plus |
| clumsy-PA | 704 | CG8681-PA | 1..685 | 101..789 | 1216 | 37.7 | Plus |
