BO23785.complete Sequence
1639 bp assembled on 2010-04-15
GenBank Submission: KX797136
> BO23785.complete
GAAGTTATCAGTCGACATGACTGTCTCTTACACCGCTGAGGTGGCAACAT
GCAGCCATTTCGGCTGCTTCTGGAAGCTTTTGATGAGATGGCGCGCAAGT
ATCTACAAGATAATATGGGTGGATCTTCTGGCATTCCTGTCCTGCTTCTA
CTTCATGGCTGTAATATATCGCTATGCTCTCAGGGACGTCGATAAGCCTG
TTTTCGAGGACATTGTGATGTACTGTCATAGCTATAGCAACCTGATTCCG
CTCTCTTTCGTACTGGGATTTTATGTGGGCATTATCATAGAACGCTGGTG
GAATCAATATATCACAGTTCCTTGGCCCGATCCGCTGGCGGTTTATGTGA
GTGCCTTGGTCCGTGGCCAAGATGAACATGGTCGTCTGATGAGACGCACG
ATTATGAGATATGTGTGCTTGGCATTGACTATGGTGCTCTCGATGATATC
GCCAGTTATAAAGCGTCGCTTTCCAACCTACGATCAGTTAATTGAGGTGG
GTTTGCTAAACGCCAACGAGGCAAATATTATGAAGGCAATGGATGTGAAG
TTTCCAAAGCACCCAAAGTATTGGATGCCCATTGTCTGGGCCGCCAGTAT
TGTAACAAGGGCTCGAAAGGAAGGTCGAATTTGGGATGACTTCTCCCTGA
AGTCCATGATAGATGAGCTCAATAAATTCCGAGCTGGATGCAATATGCTC
ATCCATTACGATACAATCTCAGTGCCACTGGTCTATACACAGGTCGTCAC
CCTGGCCGTCTACTCGTACTTTGTGGCCTCGATATTTGGTCACCAGTGGA
TCGATCGGGATATTAAGCACTACAATAATATTGTTAGTTACTACTTTCCG
TTGTTCAGCACTCTGGAGTTTTTCTTCTTCATGGGCTGGCTTAAGGTGGC
CGAGACATTGATTTGTCCTTTTGGCGATGACGACGATGACTTTGAACTGA
ACTGGCTGATCGATCGCAACTTGCAAGTGAGTTACTTGATCGTTGATGAA
ATGCACAATGATCATCCGCAGTTGGTGAGGGATCAGTATTGGGATGAGGT
GTTTCCCGCTGAGTTGCCATATGCCGTGGAGTCCGATAGGGCCGAACATC
CGGAGGCATCAACCGCTCGATTGGGCATACCAAAAGTTGTCCCCGTGACC
ATGACGAAAAGCGAAGTCAGTTTGGAAAACGATTTTACAGAGTTCGACGA
TGAGGATGAATACAACCCGGAAGTAACTATACGATTTGCCCGCCGGGAGT
TCAGTTGGAGCAAAAGTTCAGTATCGGTATCGTACTCCTATGACAACCAG
AGTATTGATACCCTTGACGAGAAGGTTGATGAAGAGAACGAGGGAGATAC
AAGGACTCTAGATTCCAGAAACAAGGACGACTTTGACCGTCTAAAGGAGA
AGCGGGACAGGGAGCGTGTGAACCGGCAGATGCAACAAGCCGCCCTCGCC
ATGGAGTTGATTAAAGGGGATCTGGCTTCGAATGGAGGATCAGCTCGATC
AAGTCGTACTAATGTCCCGCAAAAAAATTCTGATGTCCAGACCGACAGAA
GCTACTTAAGTCAGAAAAAGAGAAAGGAGGAGGACACGGACAATGATAAG
GACAGTGACGAATCTAAGAAAGCAAGCTTTCTAGACCAT
BO23785.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best3-RA | 1608 | CG12327-PA | 1..1605 | 17..1621 | 8025 | 100 | Plus |
| Best1-RD | 2211 | CG6264-PD | 856..1050 | 863..1057 | 330 | 77.9 | Plus |
| Best1-RC | 2355 | CG6264-PC | 856..1050 | 863..1057 | 330 | 77.9 | Plus |
| Best1-RD | 2211 | CG6264-PD | 556..659 | 572..675 | 220 | 80.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best3-RA | 1694 | CG12327-RA | 46..1650 | 17..1621 | 8025 | 100 | Plus |
| Best1-RD | 2930 | CG6264-RD | 1294..1488 | 863..1057 | 330 | 77.9 | Plus |
| Best1-RC | 3074 | CG6264-RC | 1294..1488 | 863..1057 | 330 | 77.9 | Plus |
| Best1-RD | 2930 | CG6264-RD | 994..1097 | 572..675 | 220 | 80.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15300959..15301840 | 1621..740 | 4410 | 100 | Minus |
| 3L | 28110227 | 3L | 15301887..15302432 | 744..199 | 2730 | 100 | Minus |
| 3L | 28110227 | 3L | 15302500..15302612 | 198..86 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 15302670..15302740 | 87..17 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 10165299..10165402 | 675..572 | 220 | 80.8 | Minus |
| 3R | 32079331 | 3R | 10165020..10165102 | 945..863 | 190 | 81.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:46:24 has no hits.
BO23785.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:21 Download gff for
BO23785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best3-RA | 1..1605 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:33 Download gff for
BO23785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best3-RA | 46..1650 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:10 Download gff for
BO23785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best3-RA | 46..1650 | 17..1623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:10 Download gff for
BO23785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15302670..15302740 | 17..87 | 100 | | Minus |
| 3L | 15300957..15301837 | 743..1623 | 99 | <- | Minus |
| 3L | 15301889..15302432 | 199..742 | 100 | <- | Minus |
| 3L | 15302500..15302610 | 88..198 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:33 Download gff for
BO23785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15295770..15295840 | 17..87 | 100 | | Minus |
| arm_3L | 15294057..15294937 | 743..1623 | 99 | <- | Minus |
| arm_3L | 15294989..15295532 | 199..742 | 100 | <- | Minus |
| arm_3L | 15295600..15295710 | 88..198 | 100 | <- | Minus |
BO23785.pep Sequence
Translation from 16 to 1639
> BO23785.pep
MTVSYTAEVATCSHFGCFWKLLMRWRASIYKIIWVDLLAFLSCFYFMAVI
YRYALRDVDKPVFEDIVMYCHSYSNLIPLSFVLGFYVGIIIERWWNQYIT
VPWPDPLAVYVSALVRGQDEHGRLMRRTIMRYVCLALTMVLSMISPVIKR
RFPTYDQLIEVGLLNANEANIMKAMDVKFPKHPKYWMPIVWAASIVTRAR
KEGRIWDDFSLKSMIDELNKFRAGCNMLIHYDTISVPLVYTQVVTLAVYS
YFVASIFGHQWIDRDIKHYNNIVSYYFPLFSTLEFFFFMGWLKVAETLIC
PFGDDDDDFELNWLIDRNLQVSYLIVDEMHNDHPQLVRDQYWDEVFPAEL
PYAVESDRAEHPEASTARLGIPKVVPVTMTKSEVSLENDFTEFDDEDEYN
PEVTIRFARREFSWSKSSVSVSYSYDNQSIDTLDEKVDEENEGDTRTLDS
RNKDDFDRLKEKRDRERVNRQMQQAALAMELIKGDLASNGGSARSSRTNV
PQKNSDVQTDRSYLSQKKRKEEDTDNDKDSDESKKASFLDH
BO23785.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best3-PA | 535 | CG12327-PA | 1..535 | 1..535 | 2837 | 100 | Plus |
| Best1-PA | 721 | CG6264-PA | 1..392 | 1..387 | 1389 | 64 | Plus |
| Best1-PD | 736 | CG6264-PD | 1..392 | 1..387 | 1389 | 64 | Plus |
| Best1-PB | 769 | CG6264-PB | 1..392 | 1..387 | 1389 | 64 | Plus |
| Best1-PC | 784 | CG6264-PC | 1..392 | 1..387 | 1389 | 64 | Plus |
