BO23791.complete Sequence
1315 bp assembled on 2010-04-15
GenBank Submission: KX798630
> BO23791.complete
GAAGTTATCAGTCGACATGGAGATATCCCAGCCCAGCATCGGCATCTTCT
ACATCAGCAAAGTGCTGGCCCTGGCTCCATATGCTACGGTCCGGAACTCC
AAGGGCCGGGTGGAAATTGGTCGCAGCTGGCTCTTCACTGTATACTCGGC
CACATTAACGGTGGTTATGGTTTTTCTCACTTATCGGGGTCTCCTGTTCG
ATGCTAACTCCGAAATTCCCGTGCGAATGAAGTCGGCTACGTCGAAGGTG
GTGACGGCCCTGGACGTGTCTGTGGTGGTCATGGCCATTGTATCCGGTGT
TTACTGTGGCCTTTTCAGCCTGAACGACACTCTCGAGCTCAACGATCGAC
TAAACAAGATCGATAATACCCTAAATGCCTACAATAACTTTCGAAGAGAT
CGATGGCGAGCCTTGGGCATGGCTGCCGTCTCTCTGCTGGCCATTTCGAT
TCTGGTCGGCCTGGATGTAGGGACGTGGATGCGCATTGCCCAGGATATGA
ACATAGCTCAGTCGGATACGGAGCTCAATGTGCACTGGTACATTCCATTC
TATAGTCTTTACTTCATCCTCACGGGCTTGCAGGTTAACATTGCCAACAC
GGCCTATGGACTAGGAAGGCGCTTTGGCCGTCTGAACCGAATGCTTTCGA
GCAGCTTTCTTGCAGAGAACAATGCAACCAGTGCCATCAAGCCACAAAAG
GTCAGCACCGTGAAGAACGTTAGCGTAAATCGGCCAGCGATGCCATCGGC
ACTCCACGCGAGCCTGACGAAGCTGAACGGCGAAACCTTGCCCAGTGAAG
CCGCAGCCAAGAACAAGGGGTTGCTCCTCAAATCCCTGGCGGACAGTCAC
GAGTCGCTGGGAAAATGTGTCCACCTCCTGTCCAACTCCTTCGGCATTGC
GGTTCTCTTCATCCTGGTGTCCTGTCTGCTGCACCTCGTGGCTACGGCCT
ACTTCCTCTTTCTGGAACTGCTCAGCAAGCGGGATAACGGCTACCTGTGG
GTGCAGATGCTCTGGATTTGCTTTCACTTCCTGCGACTGCTCATGGTGGT
GGAGCCGTGCCACTTGGCTGCCCGAGAGTCCCGTAAAACGATCCAGATTG
TTTGCGAAATCGAGCGGAAAGTGCACGAGCCCATTCTCGCGGAGGCAGTT
AAGAAGTTTTGGCAGCAGTTACTCGTCGTAGATGCTGACTTCTCCGCCTG
CGGATTGTGCCGCGTGAACCGCACCATTCTGACATCGTTTGCATCCGCCA
TAGCCACCTATCTCGTGATTCTCATTCAGTTTCAACGGACCAATGGCGCA
AGCTTTCTAGACCAT
BO23791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr43a-RA | 1284 | CG1712-PA | 1..1281 | 17..1297 | 6405 | 100 | Plus |
| Gr43a-RB | 1350 | CG1712-PB | 1..790 | 17..806 | 3950 | 100 | Plus |
| Gr43a-RC | 1362 | CG1712-PC | 1..802 | 17..806 | 3795 | 98.5 | Plus |
| Gr43a-RB | 1350 | CG1712-PB | 854..1347 | 804..1297 | 2470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr43a-RA | 1449 | CG1712-RA | 13..1293 | 17..1297 | 6405 | 100 | Plus |
| Gr43a-RB | 1515 | CG1712-RB | 13..802 | 17..806 | 3950 | 100 | Plus |
| Gr43a-RC | 1527 | CG1712-RC | 13..814 | 17..806 | 3795 | 98.5 | Plus |
| Gr43a-RB | 1515 | CG1712-RB | 866..1359 | 804..1297 | 2470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7391147..7391498 | 1237..886 | 1760 | 100 | Minus |
| 2R | 25286936 | 2R | 7392142..7392306 | 521..357 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 7392996..7393149 | 170..17 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 7391896..7392040 | 665..521 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 7391700..7391843 | 806..663 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 7392372..7392505 | 358..225 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 7391555..7391636 | 885..804 | 410 | 100 | Minus |
| 2R | 25286936 | 2R | 7391025..7391085 | 1297..1237 | 305 | 100 | Minus |
| 2R | 25286936 | 2R | 7392878..7392933 | 225..170 | 280 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dm88 | 4558 | Dm88 DM88 4558bp | 2777..2871 | 925..835 | 131 | 65.6 | Minus |
BO23791.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:29 Download gff for
BO23791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr43a-RA | 13..1293 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:50 Download gff for
BO23791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr43a-RA | 13..1293 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:25 Download gff for
BO23791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr43a-RA | 13..1293 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:25 Download gff for
BO23791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7391023..7391084 | 1238..1299 | 96 | <- | Minus |
| 2R | 7391147..7391498 | 886..1237 | 100 | <- | Minus |
| 2R | 7391555..7391633 | 807..885 | 100 | <- | Minus |
| 2R | 7391700..7391840 | 666..806 | 100 | <- | Minus |
| 2R | 7391896..7392039 | 522..665 | 100 | <- | Minus |
| 2R | 7392142..7392304 | 359..521 | 100 | <- | Minus |
| 2R | 7392372..7392504 | 226..358 | 100 | <- | Minus |
| 2R | 7392878..7392932 | 171..225 | 100 | <- | Minus |
| 2R | 7392996..7393149 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:50 Download gff for
BO23791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3278528..3278589 | 1238..1299 | 96 | <- | Minus |
| arm_2R | 3278652..3279003 | 886..1237 | 100 | <- | Minus |
| arm_2R | 3279060..3279138 | 807..885 | 100 | <- | Minus |
| arm_2R | 3279205..3279345 | 666..806 | 100 | <- | Minus |
| arm_2R | 3279401..3279544 | 522..665 | 100 | <- | Minus |
| arm_2R | 3279647..3279809 | 359..521 | 100 | <- | Minus |
| arm_2R | 3279877..3280009 | 226..358 | 100 | <- | Minus |
| arm_2R | 3280383..3280437 | 171..225 | 100 | <- | Minus |
| arm_2R | 3280501..3280654 | 17..170 | 100 | | Minus |
BO23791.pep Sequence
Translation from 16 to 1315
> BO23791.pep
MEISQPSIGIFYISKVLALAPYATVRNSKGRVEIGRSWLFTVYSATLTVV
MVFLTYRGLLFDANSEIPVRMKSATSKVVTALDVSVVVMAIVSGVYCGLF
SLNDTLELNDRLNKIDNTLNAYNNFRRDRWRALGMAAVSLLAISILVGLD
VGTWMRIAQDMNIAQSDTELNVHWYIPFYSLYFILTGLQVNIANTAYGLG
RRFGRLNRMLSSSFLAENNATSAIKPQKVSTVKNVSVNRPAMPSALHASL
TKLNGETLPSEAAAKNKGLLLKSLADSHESLGKCVHLLSNSFGIAVLFIL
VSCLLHLVATAYFLFLELLSKRDNGYLWVQMLWICFHFLRLLMVVEPCHL
AARESRKTIQIVCEIERKVHEPILAEAVKKFWQQLLVVDADFSACGLCRV
NRTILTSFASAIATYLVILIQFQRTNGASFLDH
BO23791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr43a-PA | 427 | CG1712-PA | 1..427 | 1..427 | 2155 | 100 | Plus |
| Gr43a-PB | 449 | CG1712-PB | 1..449 | 1..427 | 2122 | 95.1 | Plus |
| Gr43a-PC | 453 | CG1712-PC | 1..453 | 1..427 | 2107 | 94.3 | Plus |
| Gr28b-PA | 452 | CG13788-PA | 35..425 | 13..422 | 176 | 21 | Plus |
| Gr28b-PE | 447 | CG13788-PE | 27..420 | 12..422 | 170 | 20.7 | Plus |
