BO23807.complete Sequence
862 bp assembled on 2010-04-13
GenBank Submission: KX794174
> BO23807.complete
GAAGTTATCAGTCGACATGAATCGCGGCCAGCTTTTAGTTTTGTGCATTT
TTGCCACTGGAATTTCCCTTTCGATGGGTTTTCCCCAGGACGATCTAATT
AAGCCGGGTAGTGACGAATCGGATGTGAGTGGCATTGGCTTCGTGACGCT
CGACGGAACGGCCAGCGAAGAGAGTGACGAAAGCGACCAAGGCAACGCGT
CCGATGATTTGATATTTTTGAGTCGCCAAAAGCCAAGTCCGGTCAACAAT
TCCGTCGATTTGAGCGCCTTTGTGGCACTGATTCCTCTGCAAGAAGTCCA
GTCCATTGCTGCTCACTATTATCATCATGATGCGGAGTTTCAAAGGTCGT
ACGCCTTTCTCGCCAGCAGCGATTTCGCGGACATCAAGCGGAAAATACTT
CAGCTGCCGGAAGTGCTGGAGTTCACCAACTATCTGGGTAACAATGGACT
AGATGTCGTCAAGGTGATGCATTCGGTGGCAGGAGTGTTCAAACCGTCCA
TTCTGAGCTCCGCAGCGGTCAACGAGCCAACAAAAGTCACAACCACCGAA
GATGGCAGCTCCGCCGCTGGAGAAGCACAAACTGGCCTCCATGGAATGGT
GGAGAGGGTCCTGGAAATTCTGCCGCAGGACCAACTGTACGCCCTATTCT
TCGACGAGTTTGAGAGCAACAAACAGTTCGCAGCATTTGTCGACAGCATT
AGCAGTCCAAAGTTTGCCAAGATTTTGAGCGGTTTGCAGAACTCAATGCC
GTTGCGAAATCTACTATTTGTCCTGCACAATAACAGTATCTATGTGGAGC
GGATTGTGGAGTCCGTAAAATCGTATCTATCCATTTCCAGTTTTGCAAGC
TTTCTAGACCAT
BO23807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4409-RB | 831 | CG4409-PB | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4409-RB | 939 | CG4409-RB | 40..867 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16443250..16443757 | 17..524 | 2540 | 100 | Plus |
| 2R | 25286936 | 2R | 16443907..16444122 | 524..739 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 16444666..16444773 | 737..844 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:22:04 has no hits.
BO23807.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:45 Download gff for
BO23807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4409-RB | 15..842 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:52 Download gff for
BO23807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4409-RB | 40..867 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:56 Download gff for
BO23807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4409-RB | 40..867 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:56 Download gff for
BO23807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16444669..16444773 | 740..846 | 98 | | Plus |
| 2R | 16443250..16443757 | 17..524 | 100 | -> | Plus |
| 2R | 16443908..16444122 | 525..739 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:52 Download gff for
BO23807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12330755..12331262 | 17..524 | 100 | -> | Plus |
| arm_2R | 12331413..12331627 | 525..739 | 100 | -> | Plus |
| arm_2R | 12332174..12332278 | 740..846 | 98 | | Plus |
BO23807.pep Sequence
Translation from 16 to 862
> BO23807.pep
MNRGQLLVLCIFATGISLSMGFPQDDLIKPGSDESDVSGIGFVTLDGTAS
EESDESDQGNASDDLIFLSRQKPSPVNNSVDLSAFVALIPLQEVQSIAAH
YYHHDAEFQRSYAFLASSDFADIKRKILQLPEVLEFTNYLGNNGLDVVKV
MHSVAGVFKPSILSSAAVNEPTKVTTTEDGSSAAGEAQTGLHGMVERVLE
ILPQDQLYALFFDEFESNKQFAAFVDSISSPKFAKILSGLQNSMPLRNLL
FVLHNNSIYVERIVESVKSYLSISSFASFLDH
BO23807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4409-PB | 276 | CG4409-PB | 1..276 | 1..276 | 1379 | 100 | Plus |
| CG15712-PA | 214 | CG15712-PA | 29..208 | 81..272 | 151 | 23.2 | Plus |
