Clone BO23809 Report

Search the DGRC for BO23809

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:238
Well:9
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Man-I-RI
Protein status:BO23809.pep: Imported from assembly
Sequenced Size:2086

Clone Sequence Records

BO23809.complete Sequence

2086 bp assembled on 2010-05-06

GenBank Submission: KX796836

> BO23809.complete
GAAGTTATCAGTCGACATGTGCAGCCGGAAATGCTTCCGCATGCCCACCC
TGGTCATCTGCGGCGTCGTACTGACCATTATCCTGGTCTGCATCACGGGC
ATCACGCTGACGAACAGCATCAACATATCGAATATCGTGAAGCTGCGCGA
GAAGGTGGCCAGCGATTCGGCGGCGGCCAATGGGGGTCACCAGGCGGCCC
AGACGCGGGCGGCTCTCGTTGAGCAGCAGTACTCCACGCTGCAGCAGCAT
CATCTTTCCCGCAGCGATCTCAACTATATTCAGGCGGCGACACATCCGAA
GAATCTACAGCGCCAACTGCAGCAGCAGCAGCAGCAACAGTTGCAACAGC
AGCAACCGAATAAGATTGTCATCGAAATTGGTCTGAGCAATGACAGCGGA
CCAAGCAGTGCGCCCGCAAGCAGTACACTTGGTTCAAGCAGTACCGGTCC
GCGTATTCTTCAGGCGGCCGAGGCTTTGATGGAGGGTAATGTGGATTCGA
TTTCATTGCCAGCAGCAGCGCCGCTAACAGCAGCTACTACAAGTTCAGCT
AAAAGCTTAGAAAACAGCCAAGGGAGCGATACGCCGCATAGCCATGCAAA
TACTACCAATGCAGATATTACAATGGGCATCGCCGATCACAATCCAGGGG
GCATTCAGTTCGAGCGACGCGCCCACGTTAAACAGATGATGGAACATGCG
TGGCACAATTACAAATTGTATGCGTGGGGCAAAAACGAGCTGCGTCCGCT
TTCGCAGCGACCCCATTCGGCCAGTATTTTTGGATCATACGATCTGGGTG
CTACAATCGTCGACGGTCTGGATACCCTGTACATTATGGGACTGGAGAAG
GAATATCGCGAGGGTCGCGATTGGATCGAGCGAAAATTCTCACTGGACAA
TATCAGCGCAGAGTTGAGTGTTTTCGAAACGAACATTCGTTTTGTTGGCG
GCATGCTGACGCTGTACGCCTTTACGGGCGATCCACTGTACAAGGAGAAG
GCCCAGCACGTTGCCGACAAGCTGCTGCCCGCCTTCCAAACACCAACGGG
TATTCCCTACGCGCTGGTCAACACCAAGACCGGTGTGGCCAAGAACTACG
GCTGGGCATCCGGCGGCAGTTCTATCCTATCCGAATTTGGCACACTGCAT
CTGGAATTTGCCTATCTGAGCGACATTACCGGGAATCCACTGTATCGGGA
ACGAGTCCAGACCATTCGCCAAGTGCTCAAGGAGATCGAGAAACCAAAGG
GCCTCTATCCCAACTTCCTTAATCCCAAGACAGGCAAATGGGGGCAACTT
CACATGTCATTGGGCGCTCTGGGCGACAGCTACTACGAGTACTTGCTGAA
GGCCTGGCTGCAATCCGGCCAAACGGATGAGGAAGCCCGCGAGATGTTCG
ACGAGGCAATGCTGGCCATTCTGGATAAGATGGTCCGCACAAGTCCCGGC
GGACTGACATACGTCTCTGATCTCAAGTTCGACAGGCTGGAGCATAAGAT
GGACCATTTGGCTTGCTTCTCGGGTGGCCTCTTCGCTTTGGGAGCGGCTA
CACGTCAAAATGACTATACGGACAAGTACATGGAGGTGGGCAAGGGCATT
ACGAATACCTGCCACGAGAGCTACATCAGAGCACCCACTCAGCTGGGACC
CGAGGCCTTTAGATTCAGCGAAGCTGTGGAGGCGCGAGCACTGAGATCGC
AGGAGAAGTACTACATTCTACGGCCAGAGACTTTCGAGAGCTACTTTGTG
CTGTGGCGACTCACGCACGACCAGAAATACCGCGACTGGGGCTGGGAGGC
GGTCCTCGCCCTGGAGAAGCACTGCCGCACGGCGCACGGATATTGTGGCC
TGCGCAACGTCTACCAGCAGGAGCCGCAAAAGGACGACGTTCAGCAAAGC
TTCTTCCTCGCCGAAACGCTTAAGTACCTGTACTTGCTGTTCTCGGACGA
TTCGGTGCTGCCGCTGGACGAATGGGTGTTCAACACGGAGGCCCATCCGC
TGCCGATCAAGGGTGCGAATGCGTACTATAGACAGGCGCCCGTAACGCTT
CCGGTTTCGAACGCATCGGCAAGCTTTCTAGACCAT

BO23809.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-I-RI 2055 CG42275-PI 1..2052 17..2068 10260 100 Plus
alpha-Man-I-RO 2004 CG42275-PO 613..2001 680..2068 6930 99.9 Plus
alpha-Man-I-RN 2004 CG42275-PN 613..2001 680..2068 6930 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-I-RI 4102 CG42275-RI 546..2598 16..2068 10265 100 Plus
alpha-Man-I-RO 3808 CG42275-RO 916..2304 680..2068 6930 99.9 Plus
alpha-Man-I-RN 3853 CG42275-RN 961..2349 680..2068 6930 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10307893..10308562 685..16 3350 100 Minus
X 23542271 X 10278579..10279193 1298..684 3075 100 Minus
X 23542271 X 10277761..10278027 1924..1658 1335 100 Minus
X 23542271 X 10278291..10278517 1525..1299 1135 100 Minus
X 23542271 X 10277559..10277704 2068..1923 730 100 Minus
X 23542271 X 10278092..10278231 1662..1523 700 100 Minus
Blast to na_te.dros performed 2014-11-28 02:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2502 222..373 196 63.2 Plus

BO23809.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-06 09:24:41 Download gff for BO23809.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-I-RI 547..2598 17..2070 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:31 Download gff for BO23809.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-I-RI 547..2598 17..2070 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:37 Download gff for BO23809.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-I-RI 547..2598 17..2070 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:37 Download gff for BO23809.complete
Subject Subject Range Query Range Percent Splice Strand
X 10277557..10277702 1925..2070 98 <- Minus
X 10277761..10278022 1663..1924 100 <- Minus
X 10278092..10278230 1524..1662 100 <- Minus
X 10278293..10278517 1299..1523 100 <- Minus
X 10278579..10279191 686..1298 100 <- Minus
X 10307893..10308561 17..685 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:31 Download gff for BO23809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10171794..10172055 1663..1924 100 <- Minus
arm_X 10172125..10172263 1524..1662 100 <- Minus
arm_X 10172326..10172550 1299..1523 100 <- Minus
arm_X 10171590..10171735 1925..2070 98 <- Minus
arm_X 10172612..10173224 686..1298 100 <- Minus
arm_X 10201926..10202594 17..685 100   Minus

BO23809.pep Sequence

Translation from 16 to 2086

> BO23809.pep
MCSRKCFRMPTLVICGVVLTIILVCITGITLTNSINISNIVKLREKVASD
SAAANGGHQAAQTRAALVEQQYSTLQQHHLSRSDLNYIQAATHPKNLQRQ
LQQQQQQQLQQQQPNKIVIEIGLSNDSGPSSAPASSTLGSSSTGPRILQA
AEALMEGNVDSISLPAAAPLTAATTSSAKSLENSQGSDTPHSHANTTNAD
ITMGIADHNPGGIQFERRAHVKQMMEHAWHNYKLYAWGKNELRPLSQRPH
SASIFGSYDLGATIVDGLDTLYIMGLEKEYREGRDWIERKFSLDNISAEL
SVFETNIRFVGGMLTLYAFTGDPLYKEKAQHVADKLLPAFQTPTGIPYAL
VNTKTGVAKNYGWASGGSSILSEFGTLHLEFAYLSDITGNPLYRERVQTI
RQVLKEIEKPKGLYPNFLNPKTGKWGQLHMSLGALGDSYYEYLLKAWLQS
GQTDEEAREMFDEAMLAILDKMVRTSPGGLTYVSDLKFDRLEHKMDHLAC
FSGGLFALGAATRQNDYTDKYMEVGKGITNTCHESYIRAPTQLGPEAFRF
SEAVEARALRSQEKYYILRPETFESYFVLWRLTHDQKYRDWGWEAVLALE
KHCRTAHGYCGLRNVYQQEPQKDDVQQSFFLAETLKYLYLLFSDDSVLPL
DEWVFNTEAHPLPIKGANAYYRQAPVTLPVSNASASFLDH

BO23809.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-I-PI 684 CG42275-PI 1..684 1..684 3577 100 Plus
alpha-Man-I-PP 643 CG42275-PP 1..643 1..684 2612 76.2 Plus
alpha-Man-I-PK 643 CG42275-PK 1..643 1..684 2612 76.2 Plus
alpha-Man-I-PO 667 CG42275-PO 86..667 110..684 2498 84 Plus
alpha-Man-I-PN 667 CG42275-PN 86..667 110..684 2498 84 Plus