BO23816.complete Sequence
1459 bp assembled on 2010-05-06
GenBank Submission: KX794387
> BO23816.complete
GAAGTTATCAGTCGACATGCATTTCTGGATTGACAAGCGCTCACAGCAGT
GCGGATTTGGACGGTCTCGCGTGGCGGCCTCCTTGTCGCACGCTGGCAGC
GGTCTCAGCTATGGCCATCCGCCACGAAGGACCAAGTCCACCAGCTGCAG
CAACAGCACTGGACAGTCAATGCCACCGGTGCATCGATCTCTGCCGCAGA
CGCCGTACGATATGCATCAGCCCGGCACCAGTCGCCAGTCGCAGTCGTCA
TATGGCAACAACAATTCCCTGCATGCCCAGCAGCAGCAACATTCCAGCAG
CGGTGGAACCAGCAATAACAATAACTTGACTGCCACCGGCACAACAACAA
CTGCCAGCAACAATAACCATGCCAGCGGAATAGCCTCATCGGCAGCAGTC
CTCACCGGAAGCGGAACCATTGTTCCGCTGGTGGCACGAGGATCGCACTA
CAATCACCACGGCAACACGCGTTATCAGCCAAGGACGCAGCAGCAACTGT
TGCAACAGCAGCAGCAACAGCCACACCAGCACCAACAGCAGCAACATCAG
CAGCATCAGCAGCAGCAGCACTACAGCTACCACCATCCGCAATTCGGCAA
CATGGCTGTGCCCATGAGACACTACGATGCACATCAGCAACAGCAACAGC
AGCAATACTCGGGCAACGTCTACGCTGACGATGCCTACAGCGCCTATCAC
CACACCGCCCATCACCAGCACAGCAGCAATCACTCGACCAGCGGCAGCAA
CAACCAGCGTCAAGCGTCCGCCTACGCCACGCCACGTCGCCACAATTCCA
GCAGCAACATGCGACACTCGACGCCAGCAGCAGCGGCAACCACAACCACA
GAGACACCAAGTGTCGCCAGTCCAGCGGCAGCAGTGGCTGCTGCACCTGC
CACAATGCATAGCAGCCACTTGCAGCAGCACCATCATGCACTGCTGCAGC
ACGCGGACTCGCAACTGTTGCCCAGCCATTTGAAGTGCGGCATGTGCGCC
TCGCTGGTGCTGGCCTCCGTTTTCGTGGCAGGAACAAAGTTCTACTTCGA
CCACCAGGGCACTGGGCTGGAGGTGCTGATCTTCTGCACCTTTTCGGCCT
TCTTTTTGGCCGCCTGCTTGATCAGCCTGTGCCGCATTCCGAAAGGCCTC
TTCTCGAGTTCCAGTGGCTCGAATGGCCGAGCAGCGGTTTGCCATAGCCG
TGGTGTCAACTCCTCGTTAGCGGGAACCGGAGCTGCACAGTCCGCCGGTT
GCCTGCTGGAGATGAGCGAGGGACGGTATCTGGAGGAGCGGCAGGTGACA
GCAGTGGGCGGGACGGCGGCTACAGCCGGTCCGCCACCCTACCATATAGC
CATATTGCTGCCGGAACAGACGCCGGCGACAATGGGCAAACAACTGCCGT
TGGATGAATCACCGCCGCCATCGTACGACAAGATTCTCGTAGCAAGCTTT
CTAGACCAT
BO23816.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10713-RA | 1428 | CG10713-PA | 1..1425 | 17..1441 | 7110 | 99.9 | Plus |
| rn-RG | 2859 | CG42277-PG | 2220..2286 | 502..568 | 185 | 85.1 | Plus |
| rn-RE | 2841 | CG42277-PE | 2220..2286 | 502..568 | 185 | 85.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10713-RA | 2534 | CG10713-RA | 510..1939 | 12..1441 | 7120 | 99.9 | Plus |
| rn-RG | 5014 | CG42277-RG | 2968..3034 | 502..568 | 185 | 85.1 | Plus |
| rn-RE | 5014 | CG42277-RE | 2968..3034 | 502..568 | 185 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13429434..13430199 | 1441..676 | 3815 | 99.9 | Minus |
| 3L | 28110227 | 3L | 13430279..13430942 | 675..12 | 3305 | 99.8 | Minus |
| 3R | 32079331 | 3R | 7275212..7275298 | 592..506 | 195 | 81.6 | Minus |
Blast to na_te.dros performed 2014-11-28 02:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7197 | 473..951 | 445 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6654..7110 | 480..951 | 278 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2973 | 279..656 | 261 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7210 | 278..755 | 237 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2683 | 555..936 | 207 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2667 | 545..906 | 198 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1591 | 710..775 | 137 | 73.1 | Plus |
BO23816.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-06 09:24:42 Download gff for
BO23816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10713-RA | 515..1939 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:36 Download gff for
BO23816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10713-RA | 515..1939 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:43 Download gff for
BO23816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10713-RA | 515..1939 | 17..1443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:43 Download gff for
BO23816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13429432..13430199 | 676..1443 | 99 | <- | Minus |
| 3L | 13430279..13430937 | 17..675 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:36 Download gff for
BO23816.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13422532..13423299 | 676..1443 | 99 | <- | Minus |
| arm_3L | 13423379..13424037 | 17..675 | 100 | | Minus |
BO23816.pep Sequence
Translation from 16 to 1459
> BO23816.pep
MHFWIDKRSQQCGFGRSRVAASLSHAGSGLSYGHPPRRTKSTSCSNSTGQ
SMPPVHRSLPQTPYDMHQPGTSRQSQSSYGNNNSLHAQQQQHSSSGGTSN
NNNLTATGTTTTASNNNHASGIASSAAVLTGSGTIVPLVARGSHYNHHGN
TRYQPRTQQQLLQQQQQQPHQHQQQQHQQHQQQQHYSYHHPQFGNMAVPM
RHYDAHQQQQQQQYSGNVYADDAYSAYHHTAHHQHSSNHSTSGSNNQRQA
SAYATPRRHNSSSNMRHSTPAAAATTTTETPSVASPAAAVAAAPATMHSS
HLQQHHHALLQHADSQLLPSHLKCGMCASLVLASVFVAGTKFYFDHQGTG
LEVLIFCTFSAFFLAACLISLCRIPKGLFSSSSGSNGRAAVCHSRGVNSS
LAGTGAAQSAGCLLEMSEGRYLEERQVTAVGGTAATAGPPPYHIAILLPE
QTPATMGKQLPLDESPPPSYDKILVASFLDH
BO23816.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10713-PA | 475 | CG10713-PA | 1..475 | 1..475 | 2525 | 100 | Plus |
| Pdp1-PJ | 633 | CG17888-PJ | 38..235 | 70..296 | 215 | 31.2 | Plus |
| Pdp1-PD | 647 | CG17888-PD | 38..235 | 70..296 | 215 | 31.2 | Plus |
| abd-A-PB | 590 | CG10325-PB | 53..271 | 93..315 | 203 | 30.1 | Plus |
| Tet-PA | 2860 | CG43444-PA | 9..214 | 93..308 | 196 | 31.1 | Plus |
