BO23822.complete Sequence
3139 bp assembled on 2010-09-23
GenBank Submission: KX798210
> BO23822.complete
CATACATTATACGAAGTTATCAGTCGACATGAGTCCGCCCCAACTTTTGA
GCAAGGACTCCCCAGATATTGAGGACCTGCTGTCGCTAAATCCGCGAGTG
AAGACGCAGTGCTCCGTGGTGCCCACCAAGCAGACGAAGGAGAACAAGAA
GCACTGGAAACGCAATGCGGATCACGCTGCTCCGCCGTGCACCACGCTGG
CCAACGACTTCTCGGACATCAAGCACACCACATTGTCGGAGCGCGGAGCT
CTAGAGGAGGCGGCCAGGTGCCTCAAATGCGCCGATGCTCCGTGCCAAAA
GTCCTGTCCCACGCAGCTGGACATCAAGAGCTTCATTACGAGCATTGCGA
ATAAGAATTTCTATGGCGCCGCCAAGGCGATCTTCTCCGACAATCCGCTG
GGTCTGACCTGCGGCATGGTCTGTCCCACCAGCGATCTCTGCGTGGGCGG
TTGCAATCTGCAGGCCTCCGAGGCGGGACCGATTAACATTGGTGGCCTCC
AGCAGTTCGCCACCGAGGTGTTCAAGAAGATGGGCGTGCGGCAGCGGAGG
ACACCGCAGGCGGAGGCCAATCCGCTGTCGCAAAAGATCGCCCTCGTGGG
CGGCGGACCGGCATCGCTGTCGTGCGCCACCTTCCTGGCCCGTCTGGGCT
ATCGGGATGTGACCATCTACGAGCGGAGAAGCTATCTGGGTGGCCTGAGT
GCCGCTGAAATTCCCCAGTATCGTCTGCCCATCGATGCGGTTAACTTTGA
GATCGATTTGGTTCGCGATCTGGGCGTACGCATCGAAACGGGTCGCTCGC
TGGGCACCAAGGATTTGACCATCCAGGGACTCCTGTCCACCGGCCATGAT
GCCGTCTTTGTGGGCATTGGCCTGCCGGAACCGAAGCTGAATCCCATTTT
CGCTGGCCTTCAGCCCAGCAATGGTTTCTACACCTCGAAAAACTTCCTGC
CCTTGGTGTCGGATGGCTCGAAACCGGGTTTGTGCGCCTGCAAGGCAGCG
GCCGGTTTACCCAAGCTCCATGGCAATGTCATCGTTTTGGGTGCCGGTGA
TACGGCCTTCGATTGCGCCACTTCGGCGCTGAGATGTGGTGCTAGGCGTG
TGTTCGTCGTCTTCCGCAAAGGATCCTCCGGCATTCGTGCTGTGCCCGAA
GAGGTGGAGCTGGCGCGTGACGAACGCTGTGAGCTGTTGCCGTACCTGAG
TCCACGCAAAGTGATCGTCAAGGATGGCCTGATCACAGCCATGGAATTCT
GTCGCACGGAGCAGAACGAAAACGATGAATGGGTGGAGGATGAGGAGCAG
ACGCAGCGCTTGAAGGCGAACTTTGTGATCTCCGCCTTTGGGTCCGGCCT
GGAGGATCAGGATGTCAAGGCGGCACTAGCGCCGTTGCAATTCCGCGGCG
AATTGCCCGTGGTGGACAGGGTGACGATGCAGAGCAGTGTGAAACAGGTG
TTCCTCGGCGGCGATCTCGCTGGAGTGGCCAACACCACGGTGGAGTCGGT
CAATGATGGCAAGGTGGCCGCCTGGAGCATTCATTGTCAACTGCAGGGCC
TGCCACTGGACACGCCGGCTGCACTGCCGCTCTTCTATACGGACATCGAT
GCCGTGGACATATCGGTGGAGATGTGCGGCATCCGGTTCGAGAATCCCTT
TGGCCTGGCCTCCGCACCGCCCACCACCAGCACGGCCATGATACGTCGCG
CCTTCGAGCAGGGCTGGGGCTTTGTGGTGACCAAGACGTTCGGTCTGGAC
AAGGATCTGGTCACGAATGTCTCGCCGCGCATCGTCAGGGGCACCACGTC
GGGCTACAAGTATGGACCGCAGCAGGGCTGTTTCCTGAACATCGAACTAA
TCTCGGAGAAGCGGGCCGAGTACTGGCTGAAATCGATTGGAGAACTGAAG
CGTGACTTCCCCGAGAAGATCGTGATAGCCAGCATTATGTGCAGCTTCAA
CGAGGAAGACTGGACGGAGTTGGCCATTAAGGCGGAGCAGTCGGGTGCCG
ATGCCCTCGAGCTGAATCTATCGTGTCCACATGGCATGGGCGAGCGAGGT
ATGGGCTTGGCCTGTGGCCAGGATCCCGAGTTGGTGGAGCAGATCTCTCG
CTGGGTGCGAAAGGCGGTCAAGCTGCCCTTCTTCATCAAGCTAACGCCAA
ACATTACGGATATCGTTTCCATTGCGGCGGCCGCAAAGCGGGGAGGAGCC
GATGGCGGATCGGCCATCAACACCGTTCAGGGACTGATGGGCCTCAAGGC
GGACTCCACCGCCTGGCCGGCGATTGGCAAGGAGCAGCGCACCACTTACG
GCGGCGTCTCCGGCAATGCCACTCGTCCGATGGCTCTGAAGGCCATCTCT
GATATTGCCAACCGTGTGCCGGGATTCCCCATTCTCGGTATCGGTGGCAT
CGATTCCGGTGAGGTTGCGCTGCAGTTTATTCATGCGGGCGCCACTGTTC
TGCAGATCTGCTCCTCCGTACAGAACCAGGACTTCACCGTCATCGAGGAC
TATTGCACGGCACTGAAGGCACTGCTCTACCTGAAGGCGAATCCGCCACC
AGTCGATGGTCCCTTCTGGGATGGCCAGTCACCACCCACGCCGGTCCATC
AGAAGGGCAAGCCCGTTGTCCGTTTGACCGGCGAGGGCAAAGCCACGCTG
GGTTTCTTTGGTCCCTACCAGCGGCAGCGCGACATCAAGATGGCCGAGCT
GCGAAGTCAGAAGGGAGCTCTTTGGGATGCCGAGCAGGTGAAGGCCACTC
CTCCGGCGTCCAATGGAGCACCCAATCCGGCACCAAGAATCAAGGATGTG
ATCGGAGCAGCGCTAGACAAGATCGGGTCATACAACAAGCTGGATAACAA
ACAACAGAAGGTGGCGCTCATCGATGATGACATGTGCATAAACTGCGGAA
AGTGCTATATGACCTGCGCCGATTCCGGCTACCAGGCCATCGAATTCGAC
AAGGACACCCACATTCCGCACGTGAACGACGATTGCACGGGCTGCACACT
CTGCGTCTCCGTTTGTCCCATCATCGACTGCATCACCATGGTGCCCAAGA
AGATTCCGCACGTGATCAAGCGAGGAGTCGAGGAGAAGATCTTCTACACC
CACGCTCTCAGCCAGTGCCAGGCAAGCTTTCTAGACCAT
BO23822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(r)-RC | 3096 | CG2194-PC | 1..3093 | 29..3121 | 15465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(r)-RC | 3399 | CG2194-RC | 221..3313 | 29..3121 | 15465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9197268..9200075 | 2879..72 | 14040 | 100 | Minus |
| X | 23542271 | X | 9197053..9197210 | 3036..2879 | 790 | 100 | Minus |
| X | 23542271 | X | 9196894..9196978 | 3121..3037 | 425 | 100 | Minus |
| X | 23542271 | X | 9200132..9200177 | 74..29 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:09:40 has no hits.
BO23822.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-23 16:53:24 Download gff for
BO23822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(r)-RC | 208..3309 | 19..3123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:03 Download gff for
BO23822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(r)-RC | 208..3309 | 19..3123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:13 Download gff for
BO23822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(r)-RC | 212..3313 | 19..3123 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:13 Download gff for
BO23822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9196892..9196978 | 3037..3123 | 97 | <- | Minus |
| X | 9197053..9197210 | 2879..3036 | 100 | <- | Minus |
| X | 9197269..9200073 | 74..2878 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:03 Download gff for
BO23822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9090925..9091011 | 3037..3123 | 97 | <- | Minus |
| arm_X | 9091086..9091243 | 2879..3036 | 100 | <- | Minus |
| arm_X | 9091302..9094106 | 74..2878 | 100 | <- | Minus |
BO23822.pep Sequence
Translation from 28 to 3139
> BO23822.pep
MSPPQLLSKDSPDIEDLLSLNPRVKTQCSVVPTKQTKENKKHWKRNADHA
APPCTTLANDFSDIKHTTLSERGALEEAARCLKCADAPCQKSCPTQLDIK
SFITSIANKNFYGAAKAIFSDNPLGLTCGMVCPTSDLCVGGCNLQASEAG
PINIGGLQQFATEVFKKMGVRQRRTPQAEANPLSQKIALVGGGPASLSCA
TFLARLGYRDVTIYERRSYLGGLSAAEIPQYRLPIDAVNFEIDLVRDLGV
RIETGRSLGTKDLTIQGLLSTGHDAVFVGIGLPEPKLNPIFAGLQPSNGF
YTSKNFLPLVSDGSKPGLCACKAAAGLPKLHGNVIVLGAGDTAFDCATSA
LRCGARRVFVVFRKGSSGIRAVPEEVELARDERCELLPYLSPRKVIVKDG
LITAMEFCRTEQNENDEWVEDEEQTQRLKANFVISAFGSGLEDQDVKAAL
APLQFRGELPVVDRVTMQSSVKQVFLGGDLAGVANTTVESVNDGKVAAWS
IHCQLQGLPLDTPAALPLFYTDIDAVDISVEMCGIRFENPFGLASAPPTT
STAMIRRAFEQGWGFVVTKTFGLDKDLVTNVSPRIVRGTTSGYKYGPQQG
CFLNIELISEKRAEYWLKSIGELKRDFPEKIVIASIMCSFNEEDWTELAI
KAEQSGADALELNLSCPHGMGERGMGLACGQDPELVEQISRWVRKAVKLP
FFIKLTPNITDIVSIAAAAKRGGADGGSAINTVQGLMGLKADSTAWPAIG
KEQRTTYGGVSGNATRPMALKAISDIANRVPGFPILGIGGIDSGEVALQF
IHAGATVLQICSSVQNQDFTVIEDYCTALKALLYLKANPPPVDGPFWDGQ
SPPTPVHQKGKPVVRLTGEGKATLGFFGPYQRQRDIKMAELRSQKGALWD
AEQVKATPPASNGAPNPAPRIKDVIGAALDKIGSYNKLDNKQQKVALIDD
DMCINCGKCYMTCADSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIID
CITMVPKKIPHVIKRGVEEKIFYTHALSQCQASFLDH
BO23822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(r)-PC | 1031 | CG2194-PC | 1..1031 | 1..1031 | 5408 | 100 | Plus |
