BO23833.complete Sequence
796 bp assembled on 2010-04-15
GenBank Submission: KX794464
> BO23833.complete
GAAGTTATCAGTCGACATGCGACGACGTGTAGGCCTGGGAGCCATACAGC
AGCAGAAGCTGGCTGCGGAGAAGTACAAGGACAAGGGCACCGATCTGCAG
GAAAACCAACTCGAACAGATGACCAAGCAAATGGAGGTATTCCGGGTGAA
ACTCGAGGAATTTGCGATGAAACACAAGGAGGACATACGCAAGAATTCGC
AGTTCCGCAAACAGTTTCAGGAAATGTGCGCCGCCATCGGCGTGGATCCG
CTGGCCACCGGTAAAGGATTCTGGAGCGTTCTGGGAATGGGCGATTTCTA
CTACGAACTGGGCGTCCAGGTGGTGGAGGTTTGTCTAGCTGCCAATCACA
AAACCGGTGGACTTATGGAGCTGGACGATCTGCGACGTCGGCTAATCGCC
GCCAGAGGTCAGAGTTCAGTGCACCAGGAGATCACCAAGGAGGACATCCT
AATGGCCGCTAAGAAATTGAGCATTTTTGGCAACGGCTTTGTGGTTCACA
AGCTGGGCAAGGGCAAGTACATAGTTCAGTCCATTCCCGGAGAGCTGAGC
ATGGAGGAGACCAACATACTGAATGCCGCATCCAATACCGAACAAGGCTG
TGTTACGCAGAGTCAGCTGATCAAGGATTTGGGCTGGACCGACTATCGTG
CTCAACAGTCACTGGACAAGGTGCTCGGCGAAGGTCTCTGTTGGATTGAC
AAGCAGGCGGGCGATGAGCCAGCCTATTGGTTTCCCAGTTTGTTTCCCGG
TCGAAACGCACAGACAACGGCCGCCACAGCAAGCTTTCTAGACCAT
BO23833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lsn-RA | 765 | CG6637-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lsn-RA | 941 | CG6637-RA | 111..872 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21865278..21865747 | 17..486 | 2350 | 100 | Plus |
| 3R | 32079331 | 3R | 21865814..21865961 | 486..633 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 21866024..21866169 | 633..778 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:01:04 has no hits.
BO23833.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:19 Download gff for
BO23833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6637-RA | 79..840 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:14 Download gff for
BO23833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lsn-RA | 111..872 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:24 Download gff for
BO23833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lsn-RA | 111..872 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:24 Download gff for
BO23833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21866025..21866169 | 634..780 | 98 | | Plus |
| 3R | 21865278..21865747 | 17..486 | 100 | -> | Plus |
| 3R | 21865815..21865961 | 487..633 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:14 Download gff for
BO23833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17691000..17691469 | 17..486 | 100 | -> | Plus |
| arm_3R | 17691537..17691683 | 487..633 | 100 | -> | Plus |
| arm_3R | 17691747..17691891 | 634..780 | 98 | | Plus |
BO23833.pep Sequence
Translation from 16 to 796
> BO23833.pep
MRRRVGLGAIQQQKLAAEKYKDKGTDLQENQLEQMTKQMEVFRVKLEEFA
MKHKEDIRKNSQFRKQFQEMCAAIGVDPLATGKGFWSVLGMGDFYYELGV
QVVEVCLAANHKTGGLMELDDLRRRLIAARGQSSVHQEITKEDILMAAKK
LSIFGNGFVVHKLGKGKYIVQSIPGELSMEETNILNAASNTEQGCVTQSQ
LIKDLGWTDYRAQQSLDKVLGEGLCWIDKQAGDEPAYWFPSLFPGRNAQT
TAATASFLDH
BO23833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lsn-PA | 254 | CG6637-PA | 1..254 | 1..254 | 1315 | 100 | Plus |
