BO23841.complete Sequence
1894 bp assembled on 2010-05-06
GenBank Submission: KX798961
> BO23841.complete
GAAGTTATCAGTCGACATGTGCGGTCCTTATCCGCGGAGGCGTCGCTACT
ACCAGATTCGCGAATTCCAGATGGCCTCCTCGGCGGACGAGCTGGAAAGC
GAGGATCCGGACGATGAGCTGGAACTGGACGATTCCGAACCTCCAACCCG
CGCTGAAGACTTGCCCAAGCGACTGTACGACATTAACGAGGCGGATGCGG
ACAGCAAGGCCGTAAATCTAGAGCAGCTAACGATTAAAGAGGAGGATGCC
TGGTGGAACCAAGTGCCATTGAACAACCTGGACCTGAGCTCAAACACCTT
AACGCACATATCGCCAAAGATCGAGAATCTGCAATCACTTACCGTGCTTA
CGCTGCACGATAATGCTTTGGTGGAGTTACCACCGGAGATCGGCAAGCTG
GAAAAGCTAGTGCGCCTTAATGTGAGCCACAACAAACTCAGCCAGCTGCC
GCGTGCGATGTACAGTCTACCGGAGCTGCGGCACCTCAACATCTCGTACA
ACGAGTTCGTCGAACTTAATCCGGACATCAGTGACCTTCACATGCTTGAG
TTTTTGGACGGTGGGCATAACAATATTCAATCCCTGCCCGGTGGCATTGG
GTTCCTGGTGCGTCTAACTGCGCTCTTGTTGCCCTATAATCACATCAAGG
AACTGCCGCCCGATCTTGTTAACATGCGCTCTTTGCAAAAGATTGATCTG
ATGCATAATGATCTGACCAGCTTGCCGGAGGATATGGGCCTTTTGAGAAA
GCTGGATTGCCTTTATCTGCAGCATAACGACATACTGGAACTGCCCGAGT
TCGAGGGAAACGAGGCCTTGAACGAGCTACATGCCAGCAATAATTTCATC
AAGATCATACCAAAAGCTATGTGTAGTAACTTGCCACACCTGAAGATACT
GGATTTGCGGGACAATAAGATCACGGAGCTGCCCGACGAGCTGTGCCTGC
TGCGCAATCTAAACCGTCTCGATGTGTCCAATAATACGATCAGCGTGCTG
CCAGTCACATTGTCCTCCTTGGCTCATCTGATTAGCCTGCAGGTGGAGGG
AAATCCCATAAAGACAATCAGACGCGACATCCTACAGTGTGGAACAACGA
GGATCTTAAAGACTCTGCACGATAGAGCTGTGGCGAAGGCCAAGGAGGAG
GGAGGTGGCGTCGACGACGCTTCCACGTCAGCGGGCATCAGTGTTACCCG
TTTGCGTGGTGGCCAAATGGACGATGGTGATATACCCGGAAACTTTCCGG
ATAGATACAAACTACGACATACACGTACATTAGCTGTCAATCTGGAGGAG
CTCACGTCAGTGCCTGACCAGGTGTTCCAGATCGCCAGGGATGAGGGTGT
GCATGTGGTGGACTTTGCGCGCAACCAGCTGAGCACTTTGCCCAATGGAC
TGCAGCACATGAAAGATTTAGTTACGGAACTAGTTTTATCCAACAATGTC
ATCGGCTATGTGCCACAGTTCATCTCCCAGTTTACACGTATATCTTTCTT
GAATTTGTCCAACAATCTGTTGAATGACCTGCCCACGGAGTTTGGTGTCT
TGAATACACTGCGTGAACTAAACATTGCAAACAATCGCTTTCCGTGTATT
CCCAACTGTGTGTACGAGCTGCAAGGCCTGGAGATCCTCATTGCCAGTGA
GAACCACATAAAAATGTTAAATGTATCGGGTCTGCAGAACATGCGACGTT
TGAGCACATTGGATTTGCGCAATAACGACATCGAGACAGTGCCACCAATT
TTGGGGAACCTGACAAACATAACTCACTTGGAGCTGGTGGGCAATCCATT
TCGACAGCCCCGCCACCAAATCCTGATGAAGGGCACTGACGCCATCATGT
CGTATTTGCGCGATCGCATACCCACAGCAAGCTTTCTAGACCAT
BO23841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| f-cup-RE | 1863 | CG9611-PE | 1..1860 | 17..1876 | 9300 | 100 | Plus |
| f-cup-RB | 1953 | CG9611-PB | 236..1950 | 162..1876 | 8575 | 100 | Plus |
| f-cup-RA | 2082 | CG9611-PA | 365..2079 | 162..1876 | 8575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| f-cup-RE | 2219 | CG9611-RE | 82..1942 | 16..1876 | 9305 | 100 | Plus |
| f-cup-RB | 2470 | CG9611-RB | 479..2193 | 162..1876 | 8575 | 100 | Plus |
| f-cup-RA | 2558 | CG9611-RA | 567..2281 | 162..1876 | 8575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13696827..13697229 | 1254..852 | 2015 | 100 | Minus |
| 3R | 32079331 | 3R | 13697834..13698039 | 557..352 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 13698091..13698281 | 352..162 | 955 | 100 | Minus |
| 3R | 32079331 | 3R | 13695961..13696150 | 1587..1398 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 13695706..13695892 | 1773..1587 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 13697292..13697464 | 853..681 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 13696203..13696348 | 1398..1253 | 730 | 100 | Minus |
| 3R | 32079331 | 3R | 13698343..13698488 | 161..16 | 730 | 100 | Minus |
| 3R | 32079331 | 3R | 13697523..13697647 | 680..556 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 13695540..13695642 | 1876..1774 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:40:17 has no hits.
BO23841.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-06 09:24:45 Download gff for
BO23841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9611-RE | 83..1942 | 17..1878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:41 Download gff for
BO23841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RE | 83..1942 | 17..1878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:46 Download gff for
BO23841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RE | 83..1942 | 17..1878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:46 Download gff for
BO23841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13695538..13695642 | 1774..1878 | 98 | <- | Minus |
| 3R | 13695706..13695891 | 1588..1773 | 100 | <- | Minus |
| 3R | 13695961..13696149 | 1399..1587 | 100 | <- | Minus |
| 3R | 13696203..13696346 | 1255..1398 | 100 | <- | Minus |
| 3R | 13696827..13697227 | 854..1254 | 100 | <- | Minus |
| 3R | 13697292..13697464 | 681..853 | 100 | <- | Minus |
| 3R | 13697523..13697646 | 557..680 | 100 | <- | Minus |
| 3R | 13697835..13698038 | 353..556 | 100 | <- | Minus |
| 3R | 13698091..13698281 | 162..352 | 100 | <- | Minus |
| 3R | 13698343..13698487 | 17..161 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:41 Download gff for
BO23841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9521260..9521364 | 1774..1878 | 98 | <- | Minus |
| arm_3R | 9521428..9521613 | 1588..1773 | 100 | <- | Minus |
| arm_3R | 9521683..9521871 | 1399..1587 | 100 | <- | Minus |
| arm_3R | 9521925..9522068 | 1255..1398 | 100 | <- | Minus |
| arm_3R | 9522549..9522949 | 854..1254 | 100 | <- | Minus |
| arm_3R | 9523014..9523186 | 681..853 | 100 | <- | Minus |
| arm_3R | 9523245..9523368 | 557..680 | 100 | <- | Minus |
| arm_3R | 9523557..9523760 | 353..556 | 100 | <- | Minus |
| arm_3R | 9523813..9524003 | 162..352 | 100 | <- | Minus |
| arm_3R | 9524065..9524209 | 17..161 | 100 | | Minus |
BO23841.pep Sequence
Translation from 16 to 1894
> BO23841.pep
MCGPYPRRRRYYQIREFQMASSADELESEDPDDELELDDSEPPTRAEDLP
KRLYDINEADADSKAVNLEQLTIKEEDAWWNQVPLNNLDLSSNTLTHISP
KIENLQSLTVLTLHDNALVELPPEIGKLEKLVRLNVSHNKLSQLPRAMYS
LPELRHLNISYNEFVELNPDISDLHMLEFLDGGHNNIQSLPGGIGFLVRL
TALLLPYNHIKELPPDLVNMRSLQKIDLMHNDLTSLPEDMGLLRKLDCLY
LQHNDILELPEFEGNEALNELHASNNFIKIIPKAMCSNLPHLKILDLRDN
KITELPDELCLLRNLNRLDVSNNTISVLPVTLSSLAHLISLQVEGNPIKT
IRRDILQCGTTRILKTLHDRAVAKAKEEGGGVDDASTSAGISVTRLRGGQ
MDDGDIPGNFPDRYKLRHTRTLAVNLEELTSVPDQVFQIARDEGVHVVDF
ARNQLSTLPNGLQHMKDLVTELVLSNNVIGYVPQFISQFTRISFLNLSNN
LLNDLPTEFGVLNTLRELNIANNRFPCIPNCVYELQGLEILIASENHIKM
LNVSGLQNMRRLSTLDLRNNDIETVPPILGNLTNITHLELVGNPFRQPRH
QILMKGTDAIMSYLRDRIPTASFLDH
BO23841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| f-cup-PE | 620 | CG9611-PE | 1..620 | 1..620 | 3199 | 100 | Plus |
| f-cup-PB | 650 | CG9611-PB | 79..650 | 49..620 | 2938 | 99.8 | Plus |
| f-cup-PA | 693 | CG9611-PA | 122..693 | 49..620 | 2938 | 99.8 | Plus |
| f-cup-PI | 522 | CG9611-PI | 1..414 | 1..414 | 2135 | 99.5 | Plus |
| f-cup-PC | 522 | CG9611-PC | 1..414 | 1..414 | 2135 | 99.5 | Plus |
| f-cup-PI | 522 | CG9611-PI | 85..370 | 292..617 | 195 | 26 | Plus |
