Clone BO23853 Report

Search the DGRC for BO23853

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:238
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG7488-RA
Protein status:BO23853.pep: Imported from assembly
Sequenced Size:1153

Clone Sequence Records

BO23853.complete Sequence

1153 bp assembled on 2010-04-15

GenBank Submission: KX793837

> BO23853.complete
GAAGTTATCAGTCGACATGCGCTATAATCTGTTAGCCAGTTCGTTAAAAT
TGCTGAATAGCACGAAAACCCACAATTTGTTCTTGGTGAACGTGCGCAGC
TTGACCGGCGCCGCCCACACCAACGATGCAGTGGCTCCGACCACGCGCCC
ACCGCCCGCAGAATCGAGGAATCCCGGAGAGGAGCAACGATCACTGCACA
TCGCGGTAATTGGAGTGCCCAATGTGGGAAAGAGCACGTTCATCAACAAC
ACGGTGAACCACCGAGTGTGTCCCACCTCGGCCAAGGTGCACACCACTCG
GCAGTCGAACACGGCCATTTACACCACCGGCCAGACGCAGTTGGTCTTTT
ACGATACGCCGGGCCTGGTCACGCAACATGAGATTCGTCGGCACCACCTG
GACCAGAACTTTAAGAGTGCCTACCGCCATGCCATACAGCATGCGGACAT
CATCGCCGTGGTGCACGATGCCTCAAATGCCTGGACTAGGAAGGAACTGC
ATCCCACTGTCTTGGATACGCTGAAGGCGTATAGCAACCTGCCCAGTTTC
CTGGTGCTGAATAAGATAGACGCCCTGAAGTCGAAGCGTTTGCTGTTGGA
TCTGATCAAGACACTCACCAACGACACCTTGACAGTTGGCAAGCGGGAAG
TCCAGGCAAAAAGTGCTCTCGCCAAGGAAATAAGAATCAACAAGCGGGAG
TCTAGCTGGAGCCATTTTAGCGACGTGTTTCTTGTTTCCGCCTTGACCGG
CAATGGGCTGCAGGAGATGCAGAACTACCTGGTGGGCCAGGCTAAGCCCA
GGGATTGGAAATACCCAGCTGACATTCATACGGACTCCAGCCCAGAAGCA
TTAATTGTGGAGAGTGTGCGGGCTCGTCTGCTGGACTACTTGCCGCAGGA
GATACCCTACAACCTTAAGTGCGAGATCGAGTACTACAGTGTGGAAAAAA
ATGTTGTCTACACATCCGTGCAGGTTCAGTGCCCCACCACGCGAATCGAG
CGCCTAATCTGTGGCGAGGGTAATGGCAAGCTGCGGCAGATCACGGAGCG
AGTTACATCAGACCTGGTGGAGATGTTCGGCCAAGCAGTGTCCCTTACTA
TATCTACAGTTTCCAAGGGCAAGAAGACCGCCGCTGCAAGCTTTCTAGAC
CAT

BO23853.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7488-RA 1122 CG7488-PA 1..1119 17..1135 5595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7488-RA 1249 CG7488-RA 72..1190 17..1135 5595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12995691..12996624 17..950 4670 100 Plus
3R 32079331 3R 12996682..12996866 951..1135 925 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:34:53 has no hits.

BO23853.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:23 Download gff for BO23853.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 37..1155 17..1137 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:41 Download gff for BO23853.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 72..1190 17..1137 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:56 Download gff for BO23853.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 72..1190 17..1137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:56 Download gff for BO23853.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12995691..12996624 17..950 100 -> Plus
3R 12996682..12996866 951..1137 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:41 Download gff for BO23853.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8821413..8822346 17..950 100 -> Plus
arm_3R 8822404..8822588 951..1137 98   Plus

BO23853.pep Sequence

Translation from 16 to 1153

> BO23853.pep
MRYNLLASSLKLLNSTKTHNLFLVNVRSLTGAAHTNDAVAPTTRPPPAES
RNPGEEQRSLHIAVIGVPNVGKSTFINNTVNHRVCPTSAKVHTTRQSNTA
IYTTGQTQLVFYDTPGLVTQHEIRRHHLDQNFKSAYRHAIQHADIIAVVH
DASNAWTRKELHPTVLDTLKAYSNLPSFLVLNKIDALKSKRLLLDLIKTL
TNDTLTVGKREVQAKSALAKEIRINKRESSWSHFSDVFLVSALTGNGLQE
MQNYLVGQAKPRDWKYPADIHTDSSPEALIVESVRARLLDYLPQEIPYNL
KCEIEYYSVEKNVVYTSVQVQCPTTRIERLICGEGNGKLRQITERVTSDL
VEMFGQAVSLTISTVSKGKKTAAASFLDH

BO23853.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7488-PA 373 CG7488-PA 1..373 1..373 1910 100 Plus