BO23887.complete Sequence
349 bp assembled on 2012-04-24
GenBank Submission: KX794599
> BO23887.complete
GAAGTTATCAGTCGACATGTCTCTCGTGGATAAATTAAACTATTACAGCA
CACGAAAATCGTTCAAATATGGCATACCCTTCCTCATCATGATGGTGGCT
GGCTCCTTTGGACTGCAGCAGTTCTCCAACCTCAGGTATCAGTACGCCAA
GAAGCAGCCGGTAACGCCGGAGGAGATGAAAAAGTACGGCGTAAGCATGA
AAAACCGCAAGGATGTGACGTTGGAGTCGGAGTACGACAAAGTCAAGTCC
GTGGACATAGAGAACTGGGAGAACAAACGCGGTCCACGTCCCTGGGAGGA
GCAGGAAGATCAGCCGACGACAGCGAAGCACGCAAGCTTTCTAGACCAT
BO23887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo43-RC | 246 | CG14865-PC | 1..243 | 89..331 | 1215 | 100 | Plus |
l(3)neo43-RB | 246 | CG14865-PB | 1..243 | 89..331 | 1215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo43-RC | 627 | CG14865-RC | 48..362 | 17..331 | 1575 | 100 | Plus |
l(3)neo43-RB | 460 | CG14865-RB | 48..362 | 17..331 | 1575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15278246..15278444 | 331..133 | 995 | 100 | Minus |
3R | 32079331 | 3R | 15278502..15278621 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:24:09 has no hits.
BO23887.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 11:43:13 Download gff for
BO23887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo43-RA | 1..30 | 89..118 | 100 | == | Plus |
l(3)neo43-RA | 31..228 | 133..333 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:26 Download gff for
BO23887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo43-RB | 9..323 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:46 Download gff for
BO23887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo43-RB | 9..323 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:10:27 Download gff for
BO23887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo43-RB | 48..362 | 17..333 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:10:27 Download gff for
BO23887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15278502..15278621 | 17..133 | 97 | | Minus |
3R | 15278244..15278443 | 134..333 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:46 Download gff for
BO23887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11103966..11104165 | 134..333 | 99 | -> | Minus |
arm_3R | 11104224..11104343 | 17..133 | 97 | | Minus |
BO23887.pep Sequence
Translation from 16 to 349
> BO23887.pep
MSLVDKLNYYSTRKSFKYGIPFLIMMVAGSFGLQQFSNLRYQYAKKQPVT
PEEMKKYGVSMKNRKDVTLESEYDKVKSVDIENWENKRGPRPWEEQEDQP
TTAKHASFLDH
BO23887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo43-PC | 81 | CG14865-PC | 1..81 | 25..105 | 434 | 100 | Plus |
l(3)neo43-PB | 81 | CG14865-PB | 1..81 | 25..105 | 434 | 100 | Plus |