Clone BO23887 Report

Search the DGRC for BO23887

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:238
Well:87
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)neo43-RB
Protein status:BO23887.pep: Imported from assembly
Sequenced Size:349

Clone Sequence Records

BO23887.complete Sequence

349 bp assembled on 2012-04-24

GenBank Submission: KX794599

> BO23887.complete
GAAGTTATCAGTCGACATGTCTCTCGTGGATAAATTAAACTATTACAGCA
CACGAAAATCGTTCAAATATGGCATACCCTTCCTCATCATGATGGTGGCT
GGCTCCTTTGGACTGCAGCAGTTCTCCAACCTCAGGTATCAGTACGCCAA
GAAGCAGCCGGTAACGCCGGAGGAGATGAAAAAGTACGGCGTAAGCATGA
AAAACCGCAAGGATGTGACGTTGGAGTCGGAGTACGACAAAGTCAAGTCC
GTGGACATAGAGAACTGGGAGAACAAACGCGGTCCACGTCCCTGGGAGGA
GCAGGAAGATCAGCCGACGACAGCGAAGCACGCAAGCTTTCTAGACCAT

BO23887.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo43-RC 246 CG14865-PC 1..243 89..331 1215 100 Plus
l(3)neo43-RB 246 CG14865-PB 1..243 89..331 1215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo43-RC 627 CG14865-RC 48..362 17..331 1575 100 Plus
l(3)neo43-RB 460 CG14865-RB 48..362 17..331 1575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15278246..15278444 331..133 995 100 Minus
3R 32079331 3R 15278502..15278621 136..17 600 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:24:09 has no hits.

BO23887.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 11:43:13 Download gff for BO23887.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo43-RA 1..30 89..118 100 == Plus
l(3)neo43-RA 31..228 133..333 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:26 Download gff for BO23887.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo43-RB 9..323 17..333 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:46 Download gff for BO23887.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo43-RB 9..323 17..333 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:10:27 Download gff for BO23887.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo43-RB 48..362 17..333 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:10:27 Download gff for BO23887.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15278502..15278621 17..133 97   Minus
3R 15278244..15278443 134..333 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:46 Download gff for BO23887.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11103966..11104165 134..333 99 -> Minus
arm_3R 11104224..11104343 17..133 97   Minus

BO23887.pep Sequence

Translation from 16 to 349

> BO23887.pep
MSLVDKLNYYSTRKSFKYGIPFLIMMVAGSFGLQQFSNLRYQYAKKQPVT
PEEMKKYGVSMKNRKDVTLESEYDKVKSVDIENWENKRGPRPWEEQEDQP
TTAKHASFLDH

BO23887.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo43-PC 81 CG14865-PC 1..81 25..105 434 100 Plus
l(3)neo43-PB 81 CG14865-PB 1..81 25..105 434 100 Plus