BO23893.complete Sequence
2572 bp assembled on 2010-05-06
GenBank Submission: KX795049
> BO23893.complete
GAAGTTATCAGTCGACATGGGTCTGCGGGACACCATTCGTAACCTACGGC
CGGCAAGTCCCGGCCGGGAGAAGTCATCGGGCATCGAGCTGCAGCAGCGA
AGTCCGCGAGGTGCATGCCACCACAATCAGGTGGCCGCCGTCCAGGTCAC
GGAGCAATCATTACAGGTATGGCGCGCACTGCCAGCAGAGATTCGCCACG
ATCCCAGCATGGCCAGTTTTCAGATGGAGAACGAGAGAATCCATGGTTCC
TCCGGCGGCGCCACTGACGACGAGGATGAGGATGGATACGAGGAGGTGGA
TATGAAGAACGTCAGTCGCATTCAGGATGAGCCCGGCTCAAGCTTTGCCG
GCTCCGACTTTCTGGACATCAAGAACAGGCCTGGTGATGAGAATGCCACC
GACGATGAGGTCACCACCCACTCCGATCACGAAGCGGCCAATGGTGGTCC
GGGTAATGCCAAATCACAGGCCCGCCGGATTCATCACAAATCCAAGCGTT
CCAAGGAGCAGCGACAGCGGGACAAATTGTGGAAACGGGGTGGACTACTT
GTATTTTGGATCCTGTCGGCAGTGGTGCTGATTTCGGTGGGCGAAAAGCA
TCTGCTGGAGAAGACCATTGATGTGCCAATGGGCGAGGAGGGAAAGTTTT
TCAAGCTGCTCCAAAAACCCACTGGTGACTTCCGCTTGAAGATTCATGGC
GCTTTTAGAGAGCTCTCCACGCTGGATGCCCCCGAAAATGAGACTTTGAG
CTTTGGATTTCTGACTGTGCAGCCACAGGTGTCCACTTACATTGGCGAGA
ATCACAGCCAGGTGTTCCAGGATATACTTCCAGCGTGGCGTTTACCACTG
CTCTCCGAGGAGGAACTGATGCTGCGTGCTCCGGCTGTGACCACCAATCG
CACCTACCAGATGACTCAGGAGTTAGATGAAATGTTGGCTGGAAAGAACA
GCGAATTTCGCTTGCATATCTATAGCGATGTGGAGGTGGATTTGGCCATT
GTTCTGAACTATAATCCCTTGATAGTGAATGCCAGGACAGGGAGCATCCT
GGCTGGTGTAATCCTGCTAATCTTCTATGCACTGCTTGTTTGGGAACTCT
TCGAAAGAACCTTTGTGGCCATGATATGTTCCATTCTTTCGGTGACGACT
CTAGCCTGTTTTAATGATCGTCCCAATATGGATGAGATTATCCAGTGGAT
GGACATGGAGCTACTGACTCTACTCTTCTGCATGATGCTGCTCATTTTGA
TACTGACTGAAACTGGCGTATTCGACTACCTGGCCGTATTTTGTTTCGAG
ATATCGGGTGGCAAGATCTGGCCCATGATATATAGTCTCTGTTTGGTCAC
CTGCCTGGTGTCCAGTGTGCTGGACAACATGACAACCGTGCTGCTCCTGA
CCCCAGTGGCAATCCGATTGTGCGAGGTAATGCAGTTGGATCCCCTGCCC
GTGGTGATGGGCATTATAGTGCATGCCAATATCGGAGGAGCCCTGACGCC
CATCGGAGATCCCATCAGTATTATAGTCAGCACCAATCACTTTATTGTGG
ATAATGATGTAACTTTTCCCACATTTGTGGCCCACACATTTCCAGGTGTC
ATTCTAGCAGTTATTCAAAGTTGTGTGTACCTGCGCCTCTTCTATCACAA
TATCGATGCACTGCGTCTCAATGAGCCCAAGGAGATGAGTGAGCTGCGTA
GGGAGATGAAGGTGTGGCAGAGAGCCTTGAATGCAGTGGCCTCCTGTTCC
AAGGATGCCCAGCTGGTGAGGGGAACGCTCCAGGCTAAGATTAAGCAACT
GAAAAGGACCCTTAGAAGATTGCAAAAAGGTGTGGGCTCCACGGAGGTCT
ATACGAATACGCTGGACGAGCTCAAGCAGAAATACCCCATCAAAAACAAG
ACGCTGCTTTTGCAATCCGCTGGAGCCCTACTCTTCGTCATTGTTTGCTT
CTTCATCCAATCCGTGCCGCACTGGAGGACATTACCCCTGGGTTGGGTGG
CCCTGCTGGGTGTGATCCTGCTGCTGATCATCCTCAATCGCGATGACATG
GAGCACTTGATGCACCGCATCGAGTGGACCACGCTGCTCTTCTTCGCCGC
CATGTTCGTGATGATGGAATGCGTGGAGAGATTGGGAATCTTCGCCTGCA
TCAGTGAGCTCACCGAGCACGTTATCCTTTCGGTGGGAAAGAGTCATCGT
CTGGCCATGGCCATCTTTATGATATTATGGATGTCGGCGCTGGCATCATC
CATATTGGATAGTATTCCGGTGGCAGCCATAATGGTGAAGCTGGTGACCT
CTCTGGTGGCCAAGCCATCGCTGGGACTGCCCCTCCAGCCACTGGTTTGG
GCTCTGACCCTGGGCGCTTCGATGGGCGGAAATGGAACGCTCTATGGCGC
ATCAGCCAATGTCATTGCAGCCGGAATTGCCGAGCAACATGGCTATAAGT
TGTCCTTCACCCGATATCTGAGAACAGTTTTTCCCATGATGCTGGGACAG
ATCACCCTGATGACTGTCTATCTACTGGTGGCGCATGTGGTCTTTGAATG
GCATGCAAGCTTTCTAGACCAT
BO23893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hoe2-RA | 2541 | CG15624-PA | 1..2538 | 17..2554 | 12690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hoe2-RA | 2888 | CG15624-RA | 108..2647 | 15..2554 | 12700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4933288..4933959 | 2554..1883 | 3360 | 100 | Minus |
| 2L | 23513712 | 2L | 4935509..4935911 | 647..245 | 2015 | 100 | Minus |
| 2L | 23513712 | 2L | 4934395..4934785 | 1556..1166 | 1955 | 100 | Minus |
| 2L | 23513712 | 2L | 4934840..4935188 | 1166..818 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 4934012..4934338 | 1882..1556 | 1635 | 100 | Minus |
| 2L | 23513712 | 2L | 4936111..4936343 | 247..15 | 1165 | 100 | Minus |
| 2L | 23513712 | 2L | 4935262..4935435 | 821..648 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:40:29 has no hits.
BO23893.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-06 09:24:47 Download gff for
BO23893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe2-RA | 110..2647 | 17..2556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:46 Download gff for
BO23893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe2-RA | 110..2647 | 17..2556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:51 Download gff for
BO23893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe2-RA | 110..2647 | 17..2556 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:51 Download gff for
BO23893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4936113..4936341 | 17..245 | 100 | | Minus |
| 2L | 4935509..4935910 | 246..647 | 100 | <- | Minus |
| 2L | 4933285..4933959 | 1883..2556 | 99 | <- | Minus |
| 2L | 4934012..4934338 | 1556..1882 | 100 | <- | Minus |
| 2L | 4934396..4934784 | 1167..1555 | 100 | <- | Minus |
| 2L | 4934840..4935185 | 821..1166 | 100 | <- | Minus |
| 2L | 4935263..4935435 | 648..820 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:46 Download gff for
BO23893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4933285..4933959 | 1883..2556 | 99 | <- | Minus |
| arm_2L | 4934012..4934338 | 1556..1882 | 100 | <- | Minus |
| arm_2L | 4934396..4934784 | 1167..1555 | 100 | <- | Minus |
| arm_2L | 4934840..4935185 | 821..1166 | 100 | <- | Minus |
| arm_2L | 4935263..4935435 | 648..820 | 100 | <- | Minus |
| arm_2L | 4935509..4935910 | 246..647 | 100 | <- | Minus |
| arm_2L | 4936113..4936341 | 17..245 | 100 | | Minus |
BO23893.pep Sequence
Translation from 16 to 2572
> BO23893.pep
MGLRDTIRNLRPASPGREKSSGIELQQRSPRGACHHNQVAAVQVTEQSLQ
VWRALPAEIRHDPSMASFQMENERIHGSSGGATDDEDEDGYEEVDMKNVS
RIQDEPGSSFAGSDFLDIKNRPGDENATDDEVTTHSDHEAANGGPGNAKS
QARRIHHKSKRSKEQRQRDKLWKRGGLLVFWILSAVVLISVGEKHLLEKT
IDVPMGEEGKFFKLLQKPTGDFRLKIHGAFRELSTLDAPENETLSFGFLT
VQPQVSTYIGENHSQVFQDILPAWRLPLLSEEELMLRAPAVTTNRTYQMT
QELDEMLAGKNSEFRLHIYSDVEVDLAIVLNYNPLIVNARTGSILAGVIL
LIFYALLVWELFERTFVAMICSILSVTTLACFNDRPNMDEIIQWMDMELL
TLLFCMMLLILILTETGVFDYLAVFCFEISGGKIWPMIYSLCLVTCLVSS
VLDNMTTVLLLTPVAIRLCEVMQLDPLPVVMGIIVHANIGGALTPIGDPI
SIIVSTNHFIVDNDVTFPTFVAHTFPGVILAVIQSCVYLRLFYHNIDALR
LNEPKEMSELRREMKVWQRALNAVASCSKDAQLVRGTLQAKIKQLKRTLR
RLQKGVGSTEVYTNTLDELKQKYPIKNKTLLLQSAGALLFVIVCFFIQSV
PHWRTLPLGWVALLGVILLLIILNRDDMEHLMHRIEWTTLLFFAAMFVMM
ECVERLGIFACISELTEHVILSVGKSHRLAMAIFMILWMSALASSILDSI
PVAAIMVKLVTSLVAKPSLGLPLQPLVWALTLGASMGGNGTLYGASANVI
AAGIAEQHGYKLSFTRYLRTVFPMMLGQITLMTVYLLVAHVVFEWHASFL
DH
BO23893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hoe2-PA | 846 | CG15624-PA | 1..846 | 1..846 | 4339 | 100 | Plus |
| hoe1-PA | 803 | CG12787-PA | 4..803 | 29..846 | 1569 | 40.7 | Plus |
| hoe1-PI | 812 | CG12787-PI | 27..812 | 43..846 | 1563 | 41.2 | Plus |
| hoe1-PE | 812 | CG12787-PE | 27..812 | 43..846 | 1563 | 41.2 | Plus |
| hoe1-PD | 812 | CG12787-PD | 27..812 | 43..846 | 1563 | 41.2 | Plus |
