BO23901.complete Sequence
1720 bp assembled on 2010-05-12
GenBank Submission: KX798887
> BO23901.complete
GAAGTTATCAGTCGACATGACCATATCGGATTCGGAACTCGACAGCAGCA
AGGGCATCGACCTGACATTCAGGAGGAGAAGGAAGGCAGGTTCCGTCGCC
TGCGAAGGATTTATCACCACGTACCATGAATACTGCAGGAACACTTCCAT
ACATGGTGTCCAATATCTTGGCGAGCAGGAGCGCCCCTTCCGCGAGCGCA
TCTTTTGGCTGTTCGTGTTCCTGATCTCGATCTACGGCTGCTCCACGCTG
ATTCAAAGTGCCTACACCAAGTGGACCGAAACGCCTGTGATCGTTAGCTT
CGCGGAAAAATCGACCCCCGTGTGGAACATCCCGTTTCCGGCGGTCACAG
TTTGCTCGGAGACCAAAAGGGTGCTAAAGCAGAAAGGAAAAGAGACCACT
TATGCTGATCTTTACAGCCAGTTCAGCGAAGATATGCGAGCTTCGCGGGT
GTTTAGGCCCGAAAACGTTAGTGCCCTTGAGATGGAGGAGTTCCGCACCC
TGCTGCACGTATGCAACACGCAGATCATTGAAGAGGACATACCCTTGATA
GCCGGCGATGACTTGGACTACTTTGATGTTCTGCAGCGGATGCTGCCCCA
GTTTGATCGGTACTTCTTTTACTGCCGCTGGCTTAGTCGTTTCGGCGAGT
GCGAGACCTTCTTCCGAAAGACTCTTACGGAGGAGGGCATCTGCTATACG
TTCAATGGGCTGAGAGCCACTGAGATATACCGGGACGACACCTATCAGTA
TCAACACAGCGGGGAGCCCCTGGAAATGGAAAATATTAGCTCGCAGCATA
CGGCCTGGACTCTGGAAACGGGCTATGCACTGGACAGCGATGTGGAGACC
TTTCCGGCTCGTGTCTTAAGTGCCGGAGCGCGATCTGGCATTTTCTTGGC
CCTCCAAAGCTTTAAGCAGGAGGTGGACTACGCCTGTCGAGGACCTGTGC
AGGGATTTAAGGTACTGCTTCATGCGCCCGATGACGTCCCGCAGGTTTCC
AAACAGTTTGTGCGCATTCCCATGGGCAAGGAGGTGCTGATCGCAGTGAA
GCCCAACATGATCACCATGTCGTCGGGAATAGCAGAGTACCATCCAGTTC
GGAGGCAGTGCTTCCTCAGCCACGAGCGGTCGCTGCGTTTTTTTAAGGTG
TACACCGAATCAAATTGCCAACTGGAGTGCTTGGCCAACTTCACGCTGAC
CAAGTGCGGATGCGTTAAGTTCTCGATGCCCAGAAACGTGGACATGCCTG
TATGCGGAGAGGACAAGATCCACTGCTACGATCGGGCAGAAAGGGAGTTG
TTAGTCAGGGAATTCAAAAGAGTAAAAGCGCTGAACGCTGGCCGAGAAAA
TTCGCGGAGCGTGGAATCTGCCTGTAACTGCATGCCAGCATGCACATCCC
TCGTCTACAACACGGAGATTTCCCAGGCCAACTTTGATTTGGAAGAAATG
CTAGTGGCTGAGGGCGACACTGAGTTCCTGAAGGAGTATCCCGGCTCCCA
GATGTCCCGCTTGTCCATTTACTTCAAGCAGAGTCAGTTCATCACTTCAA
AGCGGTCGGAGCTTTACGGAATGACCGAGTTTCTGGCGAATTGCGGTGGC
ATTTTCGGTCTATTCATGGGGTTCTCCATCTTGAGTCTTGTGGAAATGAT
CTACCACTTCACGTTGCGGCTCTTTACCAATCTGAAGCGCCTGGTTAAAG
GAGCAAGCTTTCTAGACCAT
BO23901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpk-RA | 1689 | CG1058-PA | 1..1686 | 17..1702 | 8430 | 100 | Plus |
| rpk-RB | 1707 | CG1058-PB | 1..1704 | 17..1702 | 8215 | 98.9 | Plus |
| ppk26-RC | 1794 | CG8546-PC | 1219..1286 | 1163..1230 | 190 | 85.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpk-RA | 2518 | CG1058-RA | 83..1769 | 16..1702 | 8435 | 100 | Plus |
| rpk-RB | 2536 | CG1058-RB | 83..1787 | 16..1702 | 8220 | 98.9 | Plus |
| ppk26-RC | 2089 | CG8546-RC | 1259..1326 | 1163..1230 | 190 | 85.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4647393..4648135 | 960..1702 | 3715 | 100 | Plus |
| 3R | 32079331 | 3R | 4646744..4647322 | 385..963 | 2895 | 100 | Plus |
| 3R | 32079331 | 3R | 4646063..4646330 | 16..283 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 4646575..4646679 | 283..387 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 7457576..7457643 | 1163..1230 | 190 | 85.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:03:51 has no hits.
BO23901.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:43 Download gff for
BO23901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpk-RA | 134..1819 | 17..1704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:45 Download gff for
BO23901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpk-RA | 84..1769 | 17..1704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:53 Download gff for
BO23901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpk-RA | 84..1769 | 17..1704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:53 Download gff for
BO23901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4646064..4646330 | 17..283 | 100 | -> | Plus |
| 3R | 4646576..4646678 | 284..386 | 100 | -> | Plus |
| 3R | 4646746..4647320 | 387..961 | 100 | -> | Plus |
| 3R | 4647395..4648135 | 962..1704 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:45 Download gff for
BO23901.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 471786..472052 | 17..283 | 100 | -> | Plus |
| arm_3R | 472298..472400 | 284..386 | 100 | -> | Plus |
| arm_3R | 472468..473042 | 387..961 | 100 | -> | Plus |
| arm_3R | 473117..473857 | 962..1704 | 99 | | Plus |
BO23901.pep Sequence
Translation from 16 to 1720
> BO23901.pep
MTISDSELDSSKGIDLTFRRRRKAGSVACEGFITTYHEYCRNTSIHGVQY
LGEQERPFRERIFWLFVFLISIYGCSTLIQSAYTKWTETPVIVSFAEKST
PVWNIPFPAVTVCSETKRVLKQKGKETTYADLYSQFSEDMRASRVFRPEN
VSALEMEEFRTLLHVCNTQIIEEDIPLIAGDDLDYFDVLQRMLPQFDRYF
FYCRWLSRFGECETFFRKTLTEEGICYTFNGLRATEIYRDDTYQYQHSGE
PLEMENISSQHTAWTLETGYALDSDVETFPARVLSAGARSGIFLALQSFK
QEVDYACRGPVQGFKVLLHAPDDVPQVSKQFVRIPMGKEVLIAVKPNMIT
MSSGIAEYHPVRRQCFLSHERSLRFFKVYTESNCQLECLANFTLTKCGCV
KFSMPRNVDMPVCGEDKIHCYDRAERELLVREFKRVKALNAGRENSRSVE
SACNCMPACTSLVYNTEISQANFDLEEMLVAEGDTEFLKEYPGSQMSRLS
IYFKQSQFITSKRSELYGMTEFLANCGGIFGLFMGFSILSLVEMIYHFTL
RLFTNLKRLVKGASFLDH
BO23901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpk-PA | 562 | CG1058-PA | 1..562 | 1..562 | 2962 | 100 | Plus |
| rpk-PB | 568 | CG1058-PB | 1..568 | 1..562 | 2945 | 98.9 | Plus |
| ppk26-PC | 597 | CG8546-PC | 43..580 | 2..557 | 1267 | 46.3 | Plus |
| ppk-PA | 606 | CG3478-PA | 46..579 | 15..552 | 983 | 37 | Plus |
| ppk28-PA | 606 | CG4805-PA | 4..513 | 16..551 | 571 | 28.2 | Plus |
