BO23905.complete Sequence
2779 bp assembled on 2010-08-11
GenBank Submission: KX796825
> BO23905.complete
GAAGTTATCAGTCGACATGCAGGAGAAGTGGTTACTGCCCGCACTTTCGC
TGGCGCTCCTATTGGGCACCTGCTCGGCGCTCTACGAAGACCAGATCAAA
AAGTTCGACTGGCGAGGCGTCAATGTGGGAGCACTGAAGCAGTCTCGCGT
CGACCTCAACCATTTTCAGCCGCGGATTCTGGTCACCACCTATGAGGGAG
TGGTGGCCAGTCTGTGCGTAAAGACCGGCGAATTGGTGTGGCGGCAGGTG
CTCGAGCAGAAGCCGCGCGGCGACGTCAAGCTGCTCCAGGTGAGCGGATT
CGCCGATGACAGCAGCGACACGGCCGCCGCTCCGATGGGCAGCAACATGG
GCTTCGACATGCTCACCGTTCAGGGACACGCTCCTGCTTTGGTGCGCGGC
TGGAACACCAATATGGGTGCCCTTGAGTGGGAGTGGTCCATCATGCCCAT
GAACACGGAGCGGGCCCAGGACGCCATGTGGATCTACAGCAAATCCGTGC
TATATCACGTGCTGCCTGCCTGGCGGAGCCACCTCGAGGTGACGGCGTAT
TTCGCCAGCTCGGGCCACAGCACTGGCAGCACCAGCAAGGTAATAGCTCC
TTGGATCACCTCAGAGAGCTGCACCCTTAGCGGCACCTTCTACGTTTGTA
CGGACGGAAAGCAGTTGATTAGTTTGGATCTCGTTTCCAAAAGCGGTCAA
GTAATCCGTACTTCGCTCGAGGCGGAGCCGAAGGGAAAAACTCAGGCCTT
GACGGGTCTGAATGGTGTTGTGATTGTGGATGGGAAGCCAATTAGTGTCA
ACAAGGACCAATCGATCTGCGGTGATCTGCGAAGCTCCAGCTTCGCCGTG
GGCAGCTTTAACTATCGCAAAGTCTTGGCCTATGCAGATCTGTCCTCTGG
AATCCTCAGGATCAATGCTCTGTATTTGGATAACTGTGCACCGGCAGCGG
AGTTGGAGCAGAGTCTGCCATTCCCCGAGCATTTTGGCACTCCGTCGCTG
AGCAACTTCGACTGTAAGCAGAAGCGCAATGGCGAGGGCAAGAACTGTCT
GTTTTTGTTTAGCAGCACCTCGGAGTCCATCGTGGCAGTGCAGCATGGAC
GCGTTCGTTGGTCGCGCGAGGAGTCGCTGGCAAATGTGATCGACTCGCAG
TTTGTGGATCTACCGCTTGCCGATACTGAGGGCACATTGGAGAACGAGAT
GAAGGGCAAGGCCGGGGATTTCACAAGTTTTGAGAGAGACATTGCCAGTG
CCTTTTTGCGTCGCATCACCACTCAAGCTGTTCAGATTCGGAGCTTGTTC
CTTCATGTTATCGGACTGGGTCCTCCACCTACAGACACCCAGCGAGCCGG
CTTGGTCAGAGACTCCTTTGGCCTCCACAAGATGCTGGTTTTACTGACGC
GTGCTGGAAAGATTTTTGGCATTGACAATGTCTCTGGGAAACATCACTGG
CAGCTGCATCTTCCCAATGTTATTGGATTCGCTAACGACGAACAGATGCG
TCTGATTGTCCAGCGCTCGGCCAAACACTTTCCACTTCAGCCGTTGTGCA
CTATTTTGGGCAAGAATGCTGTCAGCGGCAATGGTGTGCTCTATCGTTTT
AATCCTATTACCGGCAAAGTAGCCGAAGGTGGCCTTGTTCAGCTGGACTA
CAGAATTAAGCAGCTTTCGTTGCTGGGAGAAACGGAAAAGGACTTTCTGA
AGGGCATTCTGTTACTGGATGCTTCGAATAAGGTACATGTTTATCCCGAA
CATGCGGCCCCACTGGCTGATGGCATGTATCTGTACACCGCCGATTTGAA
AACTGCAGAGCTGGCCGGCTACTTTGTTAAATATGCGGGCGGGCAACTGT
CCAGCACGCACATCTGGAATGCTCGCCTGGGCGGCCACAATTCCGAGCAG
CAGATTATCGGCGTTGCCGGCAAGAATCCCATCGAGCATGTCCACTCCCA
GGGACGTGTGCTGGGCGATCGATCGGTGCTGTACAAGTACATCAACCCTA
ATCTAGTGGCTTTCGTCACACAGGCACCGGATTCCACACACAAATCCGTG
CTAAATTTGTATCTGGTTGATGTGGTCTCCGGCTCTGTGGTTTTCACCAT
GACGCATCGTAAGGTCCGTGCACCACTGAGCATTGTCCACTCCGAAAACT
GGCTTGCCTACTCCTACTTCAACGAGAAATTGCGTCGCACAGAGATTACC
ACAATCGAACTGTACGAGGGCAAGAGTCAGGCAAACAGCAGTGTTTGGAG
TTCCTTGCAAGCTCCGCCAATGCCCCTCGTGGAGCGCCAGTCTTATATAC
TGCCCACAATAGTTGAGGCTCTGCGGGAAACTATCACGGAGCGCGGAATC
ACCAACAAGCATGTGCTTATCGGCACTGCCAGTGGTTCCATTGTGGAAAT
GCCGTGGCATTTGCTGGATCCCCGACGTCCTATCGCATCCACGACTCAGG
GACGTGAAGAAGGAGCCATCCCCTACATACCCGAGCTGCCTTTGCCAACA
GAGAGCCACATAAATTACAACCAGACGGTTGCCCGTCTGCGTAATATTTA
CACCGCGCCCAGTGGCTTGGAGAGTACCTGTCTAGTCGTTGCTACGGGCT
TAGATTTGTTCGTTACGCGCGTGGCGCCATCAAAGACGTTCGACTTGCTG
AAGGAGGACTTTGATTATATTCTCATTTCCATAGTGCTAGTCGCGCTCAC
ATCAGGCTCGTTGATTGTTAAGCATTTAGCGTCGCGTAAATTGCTCAAGC
AGGCGTGGAAAGCAAGCTTTCTAGACCAT
BO23905.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2943-RB | 2748 | CG2943-PB | 1..2745 | 17..2761 | 13725 | 100 | Plus |
| CG2943-RA | 2748 | CG2943-PA | 1..2745 | 17..2761 | 13725 | 100 | Plus |
| CG2943-RD | 2727 | CG2943-PD | 1..2724 | 17..2761 | 13375 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2943-RB | 3292 | CG2943-RB | 138..2886 | 13..2761 | 13745 | 100 | Plus |
| CG2943-RA | 3072 | CG2943-RA | 138..2886 | 13..2761 | 13745 | 100 | Plus |
| CG2943-RD | 3051 | CG2943-RD | 138..2865 | 13..2761 | 13395 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7906417..7907061 | 755..111 | 3225 | 100 | Minus |
| 3R | 32079331 | 3R | 7905049..7905385 | 1572..1236 | 1685 | 100 | Minus |
| 3R | 32079331 | 3R | 7905784..7906097 | 1215..902 | 1570 | 100 | Minus |
| 3R | 32079331 | 3R | 7903656..7903889 | 2603..2370 | 1170 | 100 | Minus |
| 3R | 32079331 | 3R | 7904404..7904606 | 2045..1843 | 1015 | 100 | Minus |
| 3R | 32079331 | 3R | 7904801..7904996 | 1766..1571 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 7903954..7904124 | 2369..2199 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 7903436..7903595 | 2761..2602 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 7904192..7904344 | 2198..2046 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 7906181..7906328 | 901..754 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 7907123..7907226 | 116..13 | 505 | 99 | Minus |
| 3R | 32079331 | 3R | 7904664..7904742 | 1843..1765 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:55:47 has no hits.
BO23905.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-11 10:36:09 Download gff for
BO23905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2943-RA | 145..2889 | 17..2763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:36 Download gff for
BO23905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2943-RA | 142..2886 | 17..2763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:55 Download gff for
BO23905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2943-RA | 142..2886 | 17..2763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:55 Download gff for
BO23905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7904664..7904741 | 1766..1843 | 100 | <- | Minus |
| 3R | 7904802..7904996 | 1571..1765 | 100 | <- | Minus |
| 3R | 7905051..7905385 | 1236..1570 | 100 | <- | Minus |
| 3R | 7905691..7905711 | 1215..1235 | 100 | <- | Minus |
| 3R | 7903434..7903593 | 2604..2763 | 98 | <- | Minus |
| 3R | 7903656..7903889 | 2370..2603 | 100 | <- | Minus |
| 3R | 7903954..7904124 | 2199..2369 | 100 | <- | Minus |
| 3R | 7904192..7904344 | 2046..2198 | 100 | <- | Minus |
| 3R | 7904404..7904605 | 1844..2045 | 100 | <- | Minus |
| 3R | 7905785..7906097 | 902..1214 | 100 | <- | Minus |
| 3R | 7906181..7906327 | 755..901 | 100 | <- | Minus |
| 3R | 7906418..7907060 | 112..754 | 100 | <- | Minus |
| 3R | 7907128..7907222 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:36 Download gff for
BO23905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3730386..3730463 | 1766..1843 | 100 | <- | Minus |
| arm_3R | 3729156..3729315 | 2604..2763 | 98 | <- | Minus |
| arm_3R | 3730524..3730718 | 1571..1765 | 100 | <- | Minus |
| arm_3R | 3729378..3729611 | 2370..2603 | 100 | <- | Minus |
| arm_3R | 3729676..3729846 | 2199..2369 | 100 | <- | Minus |
| arm_3R | 3729914..3730066 | 2046..2198 | 100 | <- | Minus |
| arm_3R | 3730126..3730327 | 1844..2045 | 100 | <- | Minus |
| arm_3R | 3730773..3731107 | 1236..1570 | 100 | <- | Minus |
| arm_3R | 3731413..3731433 | 1215..1235 | 100 | <- | Minus |
| arm_3R | 3731507..3731819 | 902..1214 | 100 | <- | Minus |
| arm_3R | 3731903..3732049 | 755..901 | 100 | <- | Minus |
| arm_3R | 3732140..3732782 | 112..754 | 100 | <- | Minus |
| arm_3R | 3732850..3732944 | 17..111 | 100 | | Minus |
BO23905.pep Sequence
Translation from 16 to 2779
> BO23905.pep
MQEKWLLPALSLALLLGTCSALYEDQIKKFDWRGVNVGALKQSRVDLNHF
QPRILVTTYEGVVASLCVKTGELVWRQVLEQKPRGDVKLLQVSGFADDSS
DTAAAPMGSNMGFDMLTVQGHAPALVRGWNTNMGALEWEWSIMPMNTERA
QDAMWIYSKSVLYHVLPAWRSHLEVTAYFASSGHSTGSTSKVIAPWITSE
SCTLSGTFYVCTDGKQLISLDLVSKSGQVIRTSLEAEPKGKTQALTGLNG
VVIVDGKPISVNKDQSICGDLRSSSFAVGSFNYRKVLAYADLSSGILRIN
ALYLDNCAPAAELEQSLPFPEHFGTPSLSNFDCKQKRNGEGKNCLFLFSS
TSESIVAVQHGRVRWSREESLANVIDSQFVDLPLADTEGTLENEMKGKAG
DFTSFERDIASAFLRRITTQAVQIRSLFLHVIGLGPPPTDTQRAGLVRDS
FGLHKMLVLLTRAGKIFGIDNVSGKHHWQLHLPNVIGFANDEQMRLIVQR
SAKHFPLQPLCTILGKNAVSGNGVLYRFNPITGKVAEGGLVQLDYRIKQL
SLLGETEKDFLKGILLLDASNKVHVYPEHAAPLADGMYLYTADLKTAELA
GYFVKYAGGQLSSTHIWNARLGGHNSEQQIIGVAGKNPIEHVHSQGRVLG
DRSVLYKYINPNLVAFVTQAPDSTHKSVLNLYLVDVVSGSVVFTMTHRKV
RAPLSIVHSENWLAYSYFNEKLRRTEITTIELYEGKSQANSSVWSSLQAP
PMPLVERQSYILPTIVEALRETITERGITNKHVLIGTASGSIVEMPWHLL
DPRRPIASTTQGREEGAIPYIPELPLPTESHINYNQTVARLRNIYTAPSG
LESTCLVVATGLDLFVTRVAPSKTFDLLKEDFDYILISIVLVALTSGSLI
VKHLASRKLLKQAWKASFLDH
BO23905.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2943-PB | 915 | CG2943-PB | 1..915 | 1..915 | 4721 | 100 | Plus |
| CG2943-PA | 915 | CG2943-PA | 1..915 | 1..915 | 4721 | 100 | Plus |
| CG2943-PD | 908 | CG2943-PD | 1..908 | 1..915 | 4666 | 99.2 | Plus |
| CG2943-PC | 908 | CG2943-PC | 1..908 | 1..915 | 4666 | 99.2 | Plus |
