BO23908.complete Sequence
1729 bp assembled on 2010-04-15
GenBank Submission: KX795071
> BO23908.complete
GAAGTTATCAGTCGACATGGTCATTCAGCGAAGTTGGAAGATCCCCACTG
ACGTGGGGGGTTCCATAAACAGCAGCACCACATCAGCTAACGAGGTGCAG
CAGCGTTCATCTCCGGGCATGCAACTGCAGGCAGCCAATTCCTCCTCAGA
CGACTCCGACTGCTCTAATCAAACCACACATTCGATGGACACACGGGTGG
CCAGTCCGGTGGAGGGTGTCCGAAAGCAGACGGAAAAGGATGTGGTACCC
GAAACCAACACAATCACCTTGTCCCTGCTGGGCGAATCCACATCCTCTGA
TGCAGAGTCCTCGCAGAAATATGTAACCACACCAGACATGGCCGAGAACA
TGTTGCAACGCATTCGCCAGCGACTTGGTGGCTCTCACAATATGGAAAGT
GGCGGTAGTGCGGAGTCCGCGATGAGAGCTCTAGAACTTTTGAGGATCAG
TGTACAGCAAGCCTTTGATGCTGAGGTGAATGAGCTCATTAAGAAATATA
TGCAAAACTACTTTAAACCCGCTTTTGGCAACATCAAGGAGAACCTGGGC
CAGCATTCTGTTAATGAGGAAACACTTCAGAAGATGTCCTCGTGTGCATT
GTTGGAGAATGCCAAGGCTCAGTACACGAACTTTGTGCGCCAGCATCGTT
TGGTTGCTAACGCCACGGATCAGCAGCGCTTGGCGCTCAAACGCTCAGCT
AAACAGGATCTCAACCCAATTAGTAAAGTGTTTGCTGGTAACGCGGGTTT
TATGCCAAACAAACCCATGCCCTGCACGGCAACTACGGCCAACCAATTGC
CAACCCAGAACCAAAACCCTGCGGCTCTCCTGCTTTCTCAACCGGACTTG
CAACCAGTTCAACCTCTTCAGCAGCAGCAGCAACAGGAACAAACACAAAC
GCAAAACCAACAACAACCGCAGCATCGCTCCACGGTTACTCCATTGGTGG
GCGGCACTCTGCCCACTCCTGTGCGCCGGCAGATATTCTGGAACACCGCG
CAGATTTCGACTACCACCAAGTTCGTGCTGGATGTGCAGGCTAACCTATC
GTTTGGCTTTGGCACCGACGGCAAGGAACGATTAGCCAGCAAGCATCCAG
AATTGATACGCTACCTGCCGGATGGCGAGGACAGGGAGTGGTTGGCCACC
CGTGGGATTATTCCTGCCGAGAATCGAAGCTCACGGTTTTTGTTTCTCAT
CTACGATGAAGTGTGCCGGCTGCAGCAAACACACGAGTTGTATAGGCACA
AAACCAATATAGATCTTAGCATGATGCTCACCTTCAGCGTCACCGATGCC
ATGATACACAAGATGCGGCTGTTCTTCGTGGACCTGAACATCAAGAGCCG
CGGACTTATAACGAATTCATATATTTTGCCCAGCCAGCAGCAGTCAGGGA
ATACCAACAACAGTCATTTAAGAAATGCCCTTCTCCAGGGCGCCTCAGCG
CAGCAGCACCAACAACAGGTAGCCACACCACCGTCTGATGAAACTGCGCT
CAAGGAGCTCCCGGCTGCATCACCCACTCCTTGCTTGCAGGGTCAGGTGG
TGGGTAGCACAACAACGCCGTTGAAGACCAAGCTGGCTGCAAGTTCTACG
CTCAGCTCCTCGCATGCCACACTTACGGCCTTGCTGAACAACGGGGGAGC
TGTTGTGGGAGCAACTCCTACAGGCAACTCCACTTCCAGCAACATCGCAA
AATTTAGAAATGCAAGCTTTCTAGACCAT
BO23908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42304-RA | 1698 | CG42304-PA | 1..1695 | 17..1711 | 8475 | 100 | Plus |
| CG42304-RB | 1698 | CG42304-PB | 1..1695 | 17..1711 | 8475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42304-RA | 3245 | CG32297-RA | 1269..2965 | 15..1711 | 8485 | 100 | Plus |
| CG42304-RB | 2039 | CG42304-RB | 63..1759 | 15..1711 | 8485 | 100 | Plus |
| Snup-RA | 3245 | CG32297-RA | 1269..2965 | 15..1711 | 8485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2653970..2655175 | 506..1711 | 6030 | 100 | Plus |
| 3L | 28110227 | 3L | 2653356..2653657 | 15..316 | 1510 | 100 | Plus |
| 3L | 28110227 | 3L | 2653713..2653906 | 312..505 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:19:09 has no hits.
BO23908.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:24:44 Download gff for
BO23908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42304-RA | 1219..2913 | 17..1713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:29 Download gff for
BO23908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42304-RA | 1271..2965 | 17..1713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:41 Download gff for
BO23908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snup-RA | 1271..2965 | 17..1713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:41 Download gff for
BO23908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2653358..2653657 | 17..316 | 100 | -> | Plus |
| 3L | 2653718..2653906 | 317..505 | 100 | -> | Plus |
| 3L | 2653970..2655175 | 506..1713 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:29 Download gff for
BO23908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2653358..2653657 | 17..316 | 100 | -> | Plus |
| arm_3L | 2653718..2653906 | 317..505 | 100 | -> | Plus |
| arm_3L | 2653970..2655175 | 506..1713 | 99 | | Plus |
BO23908.pep Sequence
Translation from 16 to 1729
> BO23908.pep
MVIQRSWKIPTDVGGSINSSTTSANEVQQRSSPGMQLQAANSSSDDSDCS
NQTTHSMDTRVASPVEGVRKQTEKDVVPETNTITLSLLGESTSSDAESSQ
KYVTTPDMAENMLQRIRQRLGGSHNMESGGSAESAMRALELLRISVQQAF
DAEVNELIKKYMQNYFKPAFGNIKENLGQHSVNEETLQKMSSCALLENAK
AQYTNFVRQHRLVANATDQQRLALKRSAKQDLNPISKVFAGNAGFMPNKP
MPCTATTANQLPTQNQNPAALLLSQPDLQPVQPLQQQQQQEQTQTQNQQQ
PQHRSTVTPLVGGTLPTPVRRQIFWNTAQISTTTKFVLDVQANLSFGFGT
DGKERLASKHPELIRYLPDGEDREWLATRGIIPAENRSSRFLFLIYDEVC
RLQQTHELYRHKTNIDLSMMLTFSVTDAMIHKMRLFFVDLNIKSRGLITN
SYILPSQQQSGNTNNSHLRNALLQGASAQQHQQQVATPPSDETALKELPA
ASPTPCLQGQVVGSTTTPLKTKLAASSTLSSSHATLTALLNNGGAVVGAT
PTGNSTSSNIAKFRNASFLDH
BO23908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42304-PA | 565 | CG32297-PA | 1..565 | 1..565 | 2873 | 100 | Plus |
| CG42304-PB | 565 | CG42304-PB | 1..565 | 1..565 | 2873 | 100 | Plus |
